Gene annotation
Transcriptome id Sobic.002G396200.1
Synonym ATDEF1, Sb02g041130, PDF1A
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
peptide deformylase, putative, expressed
UniProt A0A1B6QFV6
Pfam PF01327
Panther DB PTHR10458 PTHR10458:SF11
NCBI CDD KOG3137; Peptide deformylase
KEGG Orthology K01462; PDF, peptide deformylase
Gene Ontology GO:0005506; iron ion binding


Orthologs (automatic annotation)
TAIR AT1G15390 : peptide deformylase 1A
RAP-DB (Rice) LOC_Os01g37510.1 : peptide deformylase, putative, expressed
MaizeGDB (Corn) Zm00025a048965
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G178800 DUF630/DUF632 domains containing protein, putative, expressed -
2 Sobic.006G157800 glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.010G207700 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
4 Sobic.009G055900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
5 Sobic.004G243400 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
6 Sobic.009G010900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed -
7 Sobic.003G223100 polygalacturonase, putative, expressed -
8 Sobic.009G157000 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
9 Sobic.003G333000 LTPL65 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.001G021500 CESA5 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.001G210700 HNH endonuclease domain-containing protein, putative, expressed -
12 Sobic.006G060500 expressed protein -
13 Sobic.003G202300 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
14 Sobic.002G377300 CAMK_CAMK_like.35 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.002G285450 - -
16 Sobic.010G143300 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.009G203200 pectinesterase, putative, expressed K01051: pectinesterase
18 Sobic.007G222600 fasciclin domain containing protein, expressed -
19 Sobic.001G478100 aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)


Gene co-expression network
sample Sobic002G396200 Sobic002G396200 Sobic006G178800 Sobic006G178800 Sobic002G396200--Sobic006G178800 Sobic006G157800 Sobic006G157800 Sobic002G396200--Sobic006G157800 Sobic010G207700 Sobic010G207700 Sobic002G396200--Sobic010G207700 Sobic009G055900 Sobic009G055900 Sobic002G396200--Sobic009G055900 Sobic004G243400 Sobic004G243400 Sobic002G396200--Sobic004G243400 Sobic009G010900 Sobic009G010900 Sobic002G396200--Sobic009G010900 Sobic003G223100 Sobic003G223100 Sobic002G396200--Sobic003G223100 Sobic009G157000 Sobic009G157000 Sobic002G396200--Sobic009G157000 Sobic003G333000 Sobic003G333000 Sobic002G396200--Sobic003G333000 Sobic009G134000 Sobic009G134000 Sobic006G178800--Sobic009G134000 Sobic010G143300 Sobic010G143300 Sobic006G178800--Sobic010G143300 Sobic006G178800--Sobic003G333000 Sobic007G113900 Sobic007G113900 Sobic006G178800--Sobic007G113900 Sobic006G178800--Sobic002G396200 Sobic002G142500 Sobic002G142500 Sobic006G178800--Sobic002G142500 Sobic006G178800--Sobic010G207700 Sobic004G044100 Sobic004G044100 Sobic006G178800--Sobic004G044100 Sobic005G227050 Sobic005G227050 Sobic006G178800--Sobic005G227050 Sobic006G157800--Sobic010G207700 Sobic009G151100 Sobic009G151100 Sobic006G157800--Sobic009G151100 Sobic006G157800--Sobic002G396200 Sobic003G148400 Sobic003G148400 Sobic006G157800--Sobic003G148400 Sobic007G222600 Sobic007G222600 Sobic006G157800--Sobic007G222600 Sobic006G157800--Sobic003G223100 Sobic009G216300 Sobic009G216300 Sobic006G157800--Sobic009G216300 Sobic001G247000 Sobic001G247000 Sobic006G157800--Sobic001G247000 Sobic001G312700 Sobic001G312700 Sobic006G157800--Sobic001G312700 Sobic010G207700--Sobic006G157800 Sobic003G202300 Sobic003G202300 Sobic010G207700--Sobic003G202300 Sobic010G207700--Sobic006G178800 Sobic002G285450 Sobic002G285450 Sobic010G207700--Sobic002G285450 Sobic010G207700--Sobic009G055900 Sobic010G207700--Sobic010G143300 Sobic010G207700--Sobic002G396200 Sobic010G207700--Sobic007G222600 Sobic008G143600 Sobic008G143600 Sobic010G207700--Sobic008G143600 Sobic009G055900--Sobic008G143600 Sobic002G377300 Sobic002G377300 Sobic009G055900--Sobic002G377300 Sobic001G405000 Sobic001G405000 Sobic009G055900--Sobic001G405000 Sobic004G109000 Sobic004G109000 Sobic009G055900--Sobic004G109000 Sobic009G059100 Sobic009G059100 Sobic009G055900--Sobic009G059100 Sobic006G001400 Sobic006G001400 Sobic009G055900--Sobic006G001400 Sobic006G060500 Sobic006G060500 Sobic009G055900--Sobic006G060500 Sobic009G055900--Sobic004G243400 Sobic001G389600 Sobic001G389600 Sobic009G055900--Sobic001G389600 Sobic001G021500 Sobic001G021500 Sobic004G243400--Sobic001G021500 Sobic004G243400--Sobic009G055900 Sobic009G144200 Sobic009G144200 Sobic004G243400--Sobic009G144200 Sobic004G243400--Sobic001G405000 Sobic003G098600 Sobic003G098600 Sobic004G243400--Sobic003G098600 Sobic002G003200 Sobic002G003200 Sobic004G243400--Sobic002G003200 Sobic003G176200 Sobic003G176200 Sobic004G243400--Sobic003G176200 Sobic004G243400--Sobic004G044100 Sobic008G008500 Sobic008G008500 Sobic004G243400--Sobic008G008500 Sobic008G030000 Sobic008G030000 Sobic009G010900--Sobic008G030000 Sobic004G168500 Sobic004G168500 Sobic009G010900--Sobic004G168500 Sobic009G010900--Sobic007G222600 Sobic004G001200 Sobic004G001200 Sobic009G010900--Sobic004G001200 Sobic009G010900--Sobic003G202300 Sobic008G084200 Sobic008G084200 Sobic009G010900--Sobic008G084200 Sobic010G233800 Sobic010G233800 Sobic009G010900--Sobic010G233800 Sobic001G094200 Sobic001G094200 Sobic009G010900--Sobic001G094200 Sobic006G238000 Sobic006G238000 Sobic009G010900--Sobic006G238000 Sobic008G075200 Sobic008G075200 Sobic003G223100--Sobic008G075200 Sobic003G223100--Sobic002G377300 Sobic001G047200 Sobic001G047200 Sobic003G223100--Sobic001G047200 Sobic003G223100--Sobic009G055900 Sobic008G181400 Sobic008G181400 Sobic003G223100--Sobic008G181400 Sobic004G319800 Sobic004G319800 Sobic003G223100--Sobic004G319800 Sobic003G291000 Sobic003G291000 Sobic003G223100--Sobic003G291000 Sobic003G030700 Sobic003G030700 Sobic003G223100--Sobic003G030700 Sobic003G223100--Sobic003G148400 Sobic006G111500 Sobic006G111500 Sobic009G157000--Sobic006G111500 Sobic009G157000--Sobic002G285450 Sobic004G123600 Sobic004G123600 Sobic009G157000--Sobic004G123600 Sobic007G139000 Sobic007G139000 Sobic009G157000--Sobic007G139000 Sobic002G283800 Sobic002G283800 Sobic009G157000--Sobic002G283800 Sobic003G191800 Sobic003G191800 Sobic009G157000--Sobic003G191800 Sobic004G310700 Sobic004G310700 Sobic009G157000--Sobic004G310700 Sobic002G406400 Sobic002G406400 Sobic009G157000--Sobic002G406400 Sobic004G132400 Sobic004G132400 Sobic009G157000--Sobic004G132400 Sobic010G107200 Sobic010G107200 Sobic003G333000--Sobic010G107200 Sobic005G196500 Sobic005G196500 Sobic003G333000--Sobic005G196500 Sobic009G154100 Sobic009G154100 Sobic003G333000--Sobic009G154100 Sobic002G315000 Sobic002G315000 Sobic003G333000--Sobic002G315000 Sobic005G209900 Sobic005G209900 Sobic003G333000--Sobic005G209900 Sobic002G201100 Sobic002G201100 Sobic003G333000--Sobic002G201100 Sobic003G333000--Sobic006G001400 Sobic001G478100 Sobic001G478100 Sobic003G333000--Sobic001G478100 Sobic003G333000--Sobic005G227050
Octagon: transcription factors


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