Gene annotation
Transcriptome id Sobic.009G203200.1
Synonym Sb09g026060
Functional annotation pectinesterase, putative, expressed
UniProt A0A1Z5R4G1
Pfam PF01095
Panther DB PTHR31321 PTHR31321:SF21
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT5G19730 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os05g44600.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a044317 , Zm00025a040070 , Zm00025a037982 , Zm00025a027644
Brachypodium KQK05323 , KQK05324 , PNT72828 , PNT72827 , PNT72826 , PNT70885 , PNT70886 , KQK09679
Barley HORVU1Hr1G075860.9 , HORVU1Hr1G075860.1 , HORVU1Hr1G075860.3 , HORVU1Hr1G075860.2 , HORVU1Hr1G075860.5 , HORVU1Hr1G075860.4 , HORVU1Hr1G075860.7 , HORVU1Hr1G075860.6 , HORVU1Hr1G075860.8 , HORVU1Hr1G075860.11 , HORVU1Hr1G075860.10 , HORVU1Hr1G075860.12
Wheat TraesCS2D02G090400 , TraesCS1B02G354500 , TraesCS1B02G354500 , TraesCS1A02G341800 , TraesCS1A02G341800 , TraesCS2A02G100400 , TraesCS2D02G099900 , TraesCS2B02G117500 , TraesCS2B02G117500 , TraesCS1D02G344100 , TraesCS1D02G344100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
2 Sobic.007G162000 carboxyl-terminal peptidase, putative, expressed -
3 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
4 Sobic.007G019600 expressed protein -
5 Sobic.004G113900 polygalacturonase, putative, expressed -
6 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
7 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
8 Sobic.005G131900 inducer of CBF expression 1, putative, expressed -
9 Sobic.003G432000 expressed protein -
10 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
11 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -
12 Sobic.007G113900 reticulon domain containing protein, putative, expressed -
13 Sobic.010G234900 armadillo/beta-catenin repeat family protein, putative, expressed -
14 Sobic.001G331100 expressed protein -
15 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
16 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
17 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
18 Sobic.004G198200 expressed protein -
19 Sobic.002G330800 BTBN15 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
20 Sobic.003G100200 TOO MANY MOUTHS precursor, putative, expressed -


Gene co-expression network
sample Sobic009G203200 Sobic009G203200 Sobic002G035500 Sobic002G035500 Sobic009G203200--Sobic002G035500 Sobic007G162000 Sobic007G162000 Sobic009G203200--Sobic007G162000 Sobic008G020500 Sobic008G020500 Sobic009G203200--Sobic008G020500 Sobic007G019600 Sobic007G019600 Sobic009G203200--Sobic007G019600 Sobic004G113900 Sobic004G113900 Sobic009G203200--Sobic004G113900 Sobic005G129600 Sobic005G129600 Sobic009G203200--Sobic005G129600 Sobic010G209800 Sobic010G209800 Sobic009G203200--Sobic010G209800 Sobic005G131900 Sobic005G131900 Sobic009G203200--Sobic005G131900 Sobic003G432000 Sobic003G432000 Sobic009G203200--Sobic003G432000 Sobic002G035500--Sobic007G019600 Sobic002G035500--Sobic005G129600 Sobic002G035500--Sobic004G113900 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic003G282600 Sobic003G282600 Sobic002G035500--Sobic003G282600 Sobic009G257900 Sobic009G257900 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic002G035500--Sobic007G162000 Sobic002G202500 Sobic002G202500 Sobic007G162000--Sobic002G202500 Sobic009G195600 Sobic009G195600 Sobic007G162000--Sobic009G195600 Sobic007G162000--Sobic007G019600 Sobic003G047200 Sobic003G047200 Sobic007G162000--Sobic003G047200 Sobic001G331100 Sobic001G331100 Sobic007G162000--Sobic001G331100 Sobic007G162000--Sobic002G035500 Sobic001G253900 Sobic001G253900 Sobic007G162000--Sobic001G253900 Sobic006G155900 Sobic006G155900 Sobic007G162000--Sobic006G155900 Sobic007G162000--Sobic003G432000 Sobic004G198200 Sobic004G198200 Sobic008G020500--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic008G020500--Sobic003G040100 Sobic008G020500--Sobic006G155900 Sobic001G494300 Sobic001G494300 Sobic008G020500--Sobic001G494300 Sobic009G190400 Sobic009G190400 Sobic008G020500--Sobic009G190400 Sobic007G130000 Sobic007G130000 Sobic008G020500--Sobic007G130000 Sobic001G070200 Sobic001G070200 Sobic008G020500--Sobic001G070200 Sobic008G020500--Sobic001G331100 Sobic004G156600 Sobic004G156600 Sobic008G020500--Sobic004G156600 Sobic007G019600--Sobic002G035500 Sobic007G019600--Sobic004G237300 Sobic007G019600--Sobic001G494300 Sobic007G019600--Sobic003G282600 Sobic007G019600--Sobic006G155900 Sobic007G019600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic007G019600--Sobic010G202100 Sobic007G019600--Sobic005G129600 Sobic009G025400 Sobic009G025400 Sobic007G019600--Sobic009G025400 Sobic004G113900--Sobic005G129600 Sobic004G113900--Sobic003G432000 Sobic004G113900--Sobic002G035500 Sobic004G113900--Sobic009G257900 Sobic001G267800 Sobic001G267800 Sobic004G113900--Sobic001G267800 Sobic002G260600 Sobic002G260600 Sobic004G113900--Sobic002G260600 Sobic007G211200 Sobic007G211200 Sobic004G113900--Sobic007G211200 Sobic001G247700 Sobic001G247700 Sobic004G113900--Sobic001G247700 Sobic004G115700 Sobic004G115700 Sobic004G113900--Sobic004G115700 Sobic004G357000 Sobic004G357000 Sobic005G129600--Sobic004G357000 Sobic005G129600--Sobic004G113900 Sobic005G129600--Sobic003G432000 Sobic005G129600--Sobic007G211200 Sobic005G129600--Sobic001G267800 Sobic005G129600--Sobic002G035500 Sobic003G089300 Sobic003G089300 Sobic005G129600--Sobic003G089300 Sobic005G129600--Sobic009G257900 Sobic004G317200 Sobic004G317200 Sobic005G129600--Sobic004G317200 Sobic010G209800--Sobic002G035500 Sobic003G406500 Sobic003G406500 Sobic010G209800--Sobic003G406500 Sobic007G153300 Sobic007G153300 Sobic010G209800--Sobic007G153300 Sobic010G234900 Sobic010G234900 Sobic010G209800--Sobic010G234900 Sobic004G336700 Sobic004G336700 Sobic010G209800--Sobic004G336700 Sobic003G359200 Sobic003G359200 Sobic010G209800--Sobic003G359200 Sobic010G209800--Sobic001G494300 Sobic010G209800--Sobic002G202500 Sobic007G038000 Sobic007G038000 Sobic010G209800--Sobic007G038000 Sobic002G340350 Sobic002G340350 Sobic005G131900--Sobic002G340350 Sobic005G131900--Sobic002G035500 Sobic005G131900--Sobic004G113900 Sobic003G325400 Sobic003G325400 Sobic005G131900--Sobic003G325400 Sobic005G131900--Sobic009G203200 Sobic004G059100 Sobic004G059100 Sobic005G131900--Sobic004G059100 Sobic001G470200 Sobic001G470200 Sobic005G131900--Sobic001G470200 Sobic004G329000 Sobic004G329000 Sobic005G131900--Sobic004G329000 Sobic005G131900--Sobic007G019600 Sobic003G432000--Sobic004G113900 Sobic003G432000--Sobic005G129600 Sobic003G338200 Sobic003G338200 Sobic003G432000--Sobic003G338200 Sobic001G345200 Sobic001G345200 Sobic003G432000--Sobic001G345200 Sobic003G432000--Sobic010G234900 Sobic003G432000--Sobic007G211200 Sobic003G432000--Sobic004G357000 Sobic003G432000--Sobic001G247700 Sobic003G432000--Sobic001G267800
Octagon: transcription factors


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