Gene annotation
Transcriptome id Sobic.004G113900.1
Synonym Sb04g009310
Functional annotation polygalacturonase, putative, expressed
UniProt C5XZF9 , A0A097PQY2
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G23820 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os02g15690.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a029190 , Zm00025a034421
Brachypodium KQJ94276
Barley HORVU5Hr1G023800.8 , HORVU5Hr1G023800.4 , HORVU5Hr1G023800.5 , HORVU5Hr1G023800.6 , HORVU5Hr1G023800.7 , HORVU5Hr1G023800.1 , HORVU5Hr1G023800.2 , HORVU5Hr1G023800.3
Wheat TraesCS5A02G090800 , TraesCS5A02G090800 , TraesCS4D02G146700 , TraesCS4D02G146700 , TraesCS5A02G212900 , TraesCS5D02G219200 , TraesCS5B02G210900 , TraesCS5D02G102900 , TraesCS4B02G144700 , TraesCS4B02G144700 , TraesCS5B02G097100 , TraesCS5B02G097100 , TraesCS4A02G168800 , TraesCS4A02G168800
Populus -


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cDNA sequences
Sobic.004G113900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
2 Sobic.003G432000 expressed protein -
3 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
4 Sobic.009G257900 expressed protein -
5 Sobic.001G267800 thaumatin-like protein 1 precursor, putative, expressed -
6 Sobic.002G260600 BEE 1, putative, expressed -
7 Sobic.007G211200 inactive receptor kinase At2g26730 precursor, putative, expressed -
8 Sobic.001G247700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
9 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
10 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
12 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.007G189400 BEE 1, putative, expressed -
14 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
15 Sobic.004G329000 OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
16 Sobic.002G202500 spotted leaf 11, putative, expressed -
17 Sobic.003G083500 inactive receptor kinase At2g26730 precursor, putative, expressed -
18 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
19 Sobic.008G035400 stress responsive A/B Barrel domain containing protein, expressed -
20 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G113900 Sobic004G113900 Sobic005G129600 Sobic005G129600 Sobic004G113900--Sobic005G129600 Sobic003G432000 Sobic003G432000 Sobic004G113900--Sobic003G432000 Sobic002G035500 Sobic002G035500 Sobic004G113900--Sobic002G035500 Sobic009G257900 Sobic009G257900 Sobic004G113900--Sobic009G257900 Sobic001G267800 Sobic001G267800 Sobic004G113900--Sobic001G267800 Sobic002G260600 Sobic002G260600 Sobic004G113900--Sobic002G260600 Sobic007G211200 Sobic007G211200 Sobic004G113900--Sobic007G211200 Sobic001G247700 Sobic001G247700 Sobic004G113900--Sobic001G247700 Sobic004G115700 Sobic004G115700 Sobic004G113900--Sobic004G115700 Sobic004G357000 Sobic004G357000 Sobic005G129600--Sobic004G357000 Sobic005G129600--Sobic004G113900 Sobic005G129600--Sobic003G432000 Sobic005G129600--Sobic007G211200 Sobic005G129600--Sobic001G267800 Sobic005G129600--Sobic002G035500 Sobic003G089300 Sobic003G089300 Sobic005G129600--Sobic003G089300 Sobic005G129600--Sobic009G257900 Sobic004G317200 Sobic004G317200 Sobic005G129600--Sobic004G317200 Sobic003G432000--Sobic004G113900 Sobic003G432000--Sobic005G129600 Sobic003G338200 Sobic003G338200 Sobic003G432000--Sobic003G338200 Sobic001G345200 Sobic001G345200 Sobic003G432000--Sobic001G345200 Sobic010G234900 Sobic010G234900 Sobic003G432000--Sobic010G234900 Sobic003G432000--Sobic007G211200 Sobic003G432000--Sobic004G357000 Sobic003G432000--Sobic001G247700 Sobic003G432000--Sobic001G267800 Sobic007G019600 Sobic007G019600 Sobic002G035500--Sobic007G019600 Sobic002G035500--Sobic005G129600 Sobic002G035500--Sobic004G113900 Sobic010G209800 Sobic010G209800 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic003G282600 Sobic003G282600 Sobic002G035500--Sobic003G282600 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic007G162000 Sobic007G162000 Sobic002G035500--Sobic007G162000 Sobic009G257900--Sobic004G317200 Sobic004G108400 Sobic004G108400 Sobic009G257900--Sobic004G108400 Sobic009G025400 Sobic009G025400 Sobic009G257900--Sobic009G025400 Sobic009G257900--Sobic005G129600 Sobic004G313900 Sobic004G313900 Sobic009G257900--Sobic004G313900 Sobic004G329000 Sobic004G329000 Sobic009G257900--Sobic004G329000 Sobic001G390400 Sobic001G390400 Sobic009G257900--Sobic001G390400 Sobic009G257900--Sobic004G357000 Sobic009G257900--Sobic004G113900 Sobic003G300200 Sobic003G300200 Sobic001G267800--Sobic003G300200 Sobic001G267800--Sobic005G129600 Sobic003G113500 Sobic003G113500 Sobic001G267800--Sobic003G113500 Sobic007G189400 Sobic007G189400 Sobic001G267800--Sobic007G189400 Sobic003G309400 Sobic003G309400 Sobic001G267800--Sobic003G309400 Sobic003G300400 Sobic003G300400 Sobic001G267800--Sobic003G300400 Sobic010G078700 Sobic010G078700 Sobic001G267800--Sobic010G078700 Sobic002G072700 Sobic002G072700 Sobic001G267800--Sobic002G072700 Sobic009G141300 Sobic009G141300 Sobic001G267800--Sobic009G141300 Sobic002G260600--Sobic001G247700 Sobic002G139800 Sobic002G139800 Sobic002G260600--Sobic002G139800 Sobic007G181100 Sobic007G181100 Sobic002G260600--Sobic007G181100 Sobic002G260600--Sobic004G113900 Sobic002G260600--Sobic001G267800 Sobic002G260600--Sobic007G189400 Sobic002G260600--Sobic002G072700 Sobic009G254500 Sobic009G254500 Sobic002G260600--Sobic009G254500 Sobic001G228100 Sobic001G228100 Sobic002G260600--Sobic001G228100 Sobic001G046400 Sobic001G046400 Sobic007G211200--Sobic001G046400 Sobic007G211200--Sobic004G357000 Sobic007G211200--Sobic003G089300 Sobic002G032500 Sobic002G032500 Sobic007G211200--Sobic002G032500 Sobic004G211700 Sobic004G211700 Sobic007G211200--Sobic004G211700 Sobic004G342000 Sobic004G342000 Sobic007G211200--Sobic004G342000 Sobic007G211200--Sobic003G113500 Sobic001G135600 Sobic001G135600 Sobic007G211200--Sobic001G135600 Sobic002G337600 Sobic002G337600 Sobic007G211200--Sobic002G337600 Sobic001G247700--Sobic007G181100 Sobic003G083500 Sobic003G083500 Sobic001G247700--Sobic003G083500 Sobic006G108100 Sobic006G108100 Sobic001G247700--Sobic006G108100 Sobic001G068800 Sobic001G068800 Sobic001G247700--Sobic001G068800 Sobic001G247700--Sobic002G260600 Sobic001G247700--Sobic003G113500 Sobic001G247700--Sobic007G211200 Sobic001G247700--Sobic004G357000 Sobic001G247700--Sobic005G129600 Sobic009G200000 Sobic009G200000 Sobic004G115700--Sobic009G200000 Sobic008G042200 Sobic008G042200 Sobic004G115700--Sobic008G042200 Sobic005G092700 Sobic005G092700 Sobic004G115700--Sobic005G092700 Sobic008G190000 Sobic008G190000 Sobic004G115700--Sobic008G190000 Sobic006G240900 Sobic006G240900 Sobic004G115700--Sobic006G240900 Sobic010G106100 Sobic010G106100 Sobic004G115700--Sobic010G106100 Sobic006G110850 Sobic006G110850 Sobic004G115700--Sobic006G110850 Sobic003G366000 Sobic003G366000 Sobic004G115700--Sobic003G366000 Sobic009G124800 Sobic009G124800 Sobic004G115700--Sobic009G124800
Octagon: transcription factors


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