Gene annotation
Transcriptome id Sobic.010G209800.1
Synonym Sb10g025650
Functional annotation methyladenine glycosylase, putative, expressed
UniProt C5Z6U0
Pfam PF03352
Panther DB PTHR31116 PTHR31116:SF1
NCBI CDD -
KEGG Orthology K01246; DNA-3-methyladenine glycosylase I
Gene Ontology GO:0008725; DNA-3-methyladenine glycosylase activity GO:0006284base-excision repair


Orthologs (automatic annotation)
TAIR AT5G57970 : DNA glycosylase superfamily protein
RAP-DB (Rice) LOC_Os06g44050.1 : methyladenine glycosylase, putative, expressed
MaizeGDB (Corn) Zm00025a042037
Brachypodium -
Barley HORVU7Hr1G113650.13 , HORVU7Hr1G113650.2
Wheat TraesCS7D02G496200 , TraesCS3B02G573200 , TraesCS3B02G573200 , TraesCS3B02G573200 , TraesCS7B02G416200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G035500 CIN-like (ClassII) Subclade 13 TCP(PubMedID : 21444336)@basic helix-loop-helix (bHLH) transcription factor(PubMedID : 23915383)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
2 Sobic.003G406500 antifreeze glycoprotein, putative, expressed -
3 Sobic.007G153300 ZOS8-07 - C2H2 zinc finger protein, expressed -
4 Sobic.010G234900 armadillo/beta-catenin repeat family protein, putative, expressed -
5 Sobic.004G336700 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.003G359200 DUF740 domain containing protein, expressed -
7 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
8 Sobic.002G202500 spotted leaf 11, putative, expressed -
9 Sobic.007G038000 receptor-like protein kinase 5 precursor, putative, expressed -
10 Sobic.007G019600 expressed protein -
11 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
12 Sobic.009G257900 expressed protein -
13 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
14 Sobic.009G136600 peptide transporter PTR2, putative, expressed -
15 Sobic.005G129600 OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
16 Sobic.004G113900 polygalacturonase, putative, expressed -
17 Sobic.009G163700 fasciclin-like arabinogalactan protein, putative, expressed -
18 Sobic.006G163650 - -
19 Sobic.001G331100 expressed protein -
20 Sobic.002G425600 down-regulated TF in developmental senescence(PubMedID : 27586543)@bZIP transcription factor domain containing protein, expressed K14432: ABA responsive element binding factor


Gene co-expression network
sample Sobic010G209800 Sobic010G209800 Sobic002G035500 Sobic002G035500 Sobic010G209800--Sobic002G035500 Sobic003G406500 Sobic003G406500 Sobic010G209800--Sobic003G406500 Sobic007G153300 Sobic007G153300 Sobic010G209800--Sobic007G153300 Sobic010G234900 Sobic010G234900 Sobic010G209800--Sobic010G234900 Sobic004G336700 Sobic004G336700 Sobic010G209800--Sobic004G336700 Sobic003G359200 Sobic003G359200 Sobic010G209800--Sobic003G359200 Sobic001G494300 Sobic001G494300 Sobic010G209800--Sobic001G494300 Sobic002G202500 Sobic002G202500 Sobic010G209800--Sobic002G202500 Sobic007G038000 Sobic007G038000 Sobic010G209800--Sobic007G038000 Sobic007G019600 Sobic007G019600 Sobic002G035500--Sobic007G019600 Sobic005G129600 Sobic005G129600 Sobic002G035500--Sobic005G129600 Sobic004G113900 Sobic004G113900 Sobic002G035500--Sobic004G113900 Sobic002G035500--Sobic010G209800 Sobic004G191600 Sobic004G191600 Sobic002G035500--Sobic004G191600 Sobic003G282600 Sobic003G282600 Sobic002G035500--Sobic003G282600 Sobic009G257900 Sobic009G257900 Sobic002G035500--Sobic009G257900 Sobic004G237300 Sobic004G237300 Sobic002G035500--Sobic004G237300 Sobic007G162000 Sobic007G162000 Sobic002G035500--Sobic007G162000 Sobic009G254400 Sobic009G254400 Sobic003G406500--Sobic009G254400 Sobic003G406500--Sobic007G153300 Sobic006G108000 Sobic006G108000 Sobic003G406500--Sobic006G108000 Sobic008G163800 Sobic008G163800 Sobic003G406500--Sobic008G163800 Sobic003G006500 Sobic003G006500 Sobic003G406500--Sobic003G006500 Sobic001G263500 Sobic001G263500 Sobic003G406500--Sobic001G263500 Sobic003G406500--Sobic003G359200 Sobic001G331100 Sobic001G331100 Sobic003G406500--Sobic001G331100 Sobic003G406500--Sobic010G209800 Sobic007G153300--Sobic003G359200 Sobic007G153300--Sobic003G406500 Sobic007G153300--Sobic003G006500 Sobic004G061600 Sobic004G061600 Sobic007G153300--Sobic004G061600 Sobic004G156600 Sobic004G156600 Sobic007G153300--Sobic004G156600 Sobic003G390300 Sobic003G390300 Sobic007G153300--Sobic003G390300 Sobic007G153300--Sobic008G163800 Sobic001G062700 Sobic001G062700 Sobic007G153300--Sobic001G062700 Sobic008G136900 Sobic008G136900 Sobic007G153300--Sobic008G136900 Sobic003G432000 Sobic003G432000 Sobic010G234900--Sobic003G432000 Sobic010G234900--Sobic010G209800 Sobic010G234900--Sobic005G129600 Sobic010G234900--Sobic007G038000 Sobic007G113900 Sobic007G113900 Sobic010G234900--Sobic007G113900 Sobic004G133000 Sobic004G133000 Sobic010G234900--Sobic004G133000 Sobic010G234900--Sobic002G202500 Sobic006G176400 Sobic006G176400 Sobic010G234900--Sobic006G176400 Sobic010G234900--Sobic004G113900 Sobic004G336700--Sobic002G202500 Sobic001G265300 Sobic001G265300 Sobic004G336700--Sobic001G265300 Sobic004G336700--Sobic010G209800 Sobic001G273100 Sobic001G273100 Sobic004G336700--Sobic001G273100 Sobic002G412400 Sobic002G412400 Sobic004G336700--Sobic002G412400 Sobic002G229800 Sobic002G229800 Sobic004G336700--Sobic002G229800 Sobic004G336700--Sobic006G108000 Sobic004G336700--Sobic003G406500 Sobic006G163600 Sobic006G163600 Sobic004G336700--Sobic006G163600 Sobic003G359200--Sobic007G153300 Sobic004G107400 Sobic004G107400 Sobic003G359200--Sobic004G107400 Sobic010G014900 Sobic010G014900 Sobic003G359200--Sobic010G014900 Sobic003G359200--Sobic001G062700 Sobic003G359200--Sobic003G390300 Sobic007G158400 Sobic007G158400 Sobic003G359200--Sobic007G158400 Sobic003G359200--Sobic003G006500 Sobic003G359200--Sobic008G163800 Sobic005G168500 Sobic005G168500 Sobic003G359200--Sobic005G168500 Sobic006G155900 Sobic006G155900 Sobic001G494300--Sobic006G155900 Sobic008G020500 Sobic008G020500 Sobic001G494300--Sobic008G020500 Sobic004G198200 Sobic004G198200 Sobic001G494300--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic001G494300--Sobic003G040100 Sobic001G494300--Sobic007G019600 Sobic001G427400 Sobic001G427400 Sobic001G494300--Sobic001G427400 Sobic003G047200 Sobic003G047200 Sobic001G494300--Sobic003G047200 Sobic009G163700 Sobic009G163700 Sobic001G494300--Sobic009G163700 Sobic007G130000 Sobic007G130000 Sobic001G494300--Sobic007G130000 Sobic002G202500--Sobic007G162000 Sobic002G202500--Sobic004G336700 Sobic001G247700 Sobic001G247700 Sobic002G202500--Sobic001G247700 Sobic009G195600 Sobic009G195600 Sobic002G202500--Sobic009G195600 Sobic002G202500--Sobic001G265300 Sobic002G202500--Sobic004G113900 Sobic002G202500--Sobic007G019600 Sobic002G202500--Sobic010G209800 Sobic004G283800 Sobic004G283800 Sobic002G202500--Sobic004G283800 Sobic002G425600 Sobic002G425600 Sobic007G038000--Sobic002G425600 Sobic007G038000--Sobic007G153300 Sobic007G181100 Sobic007G181100 Sobic007G038000--Sobic007G181100 Sobic007G038000--Sobic003G432000 Sobic007G038000--Sobic010G234900 Sobic003G083500 Sobic003G083500 Sobic007G038000--Sobic003G083500 Sobic007G038000--Sobic010G209800 Sobic007G038000--Sobic003G359200 Sobic007G038000--Sobic001G247700
Octagon: transcription factors


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