Hb_007181_010

Information

Type -
Description -
Location Contig7181: 24282-25952
Sequence    

Annotation

kegg
ID rcu:RCOM_0935110
description Polyphenol oxidase, chloroplast precursor, putative (EC:1.10.3.1)
nr
ID AHF20575.1
description polyphenol oxidase [Hevea brasiliensis]
swissprot
ID P43309
description Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1
trembl
ID B9RZ47
description Polyphenol oxidase, chloroplast, putative OS=Ricinus communis GN=RCOM_0935110 PE=4 SV=1
Gene Ontology
ID GO:0009543
description polyphenol oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007181_010 0.0 - - polyphenol oxidase [Hevea brasiliensis]
2 Hb_000011_430 0.3377437673 - - zinc finger protein, putative [Ricinus communis]
3 Hb_006973_030 0.3390998412 - - -
4 Hb_003878_040 0.3410683711 - - -
5 Hb_000286_240 0.341610086 - - -
6 Hb_149181_020 0.3417967964 - - -
7 Hb_018264_010 0.341862029 - - PREDICTED: uncharacterized protein LOC105630996 [Jatropha curcas]
8 Hb_001422_040 0.3419300178 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
9 Hb_004953_020 0.3437899341 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
10 Hb_008153_020 0.345411118 - - -
11 Hb_036609_010 0.3456018756 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
12 Hb_029920_040 0.3472873339 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
13 Hb_005109_030 0.3480116048 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
14 Hb_000758_040 0.3499453989 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
15 Hb_001355_130 0.3525582903 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
16 Hb_000212_220 0.3552599217 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
17 Hb_006775_010 0.3562903991 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
18 Hb_000031_040 0.3571600103 - - centromere protein O [Medicago truncatula]
19 Hb_000069_680 0.3601258016 - - -
20 Hb_019093_010 0.3610113643 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]

Gene co-expression network

sample Hb_007181_010 Hb_007181_010 Hb_000011_430 Hb_000011_430 Hb_007181_010--Hb_000011_430 Hb_006973_030 Hb_006973_030 Hb_007181_010--Hb_006973_030 Hb_003878_040 Hb_003878_040 Hb_007181_010--Hb_003878_040 Hb_000286_240 Hb_000286_240 Hb_007181_010--Hb_000286_240 Hb_149181_020 Hb_149181_020 Hb_007181_010--Hb_149181_020 Hb_018264_010 Hb_018264_010 Hb_007181_010--Hb_018264_010 Hb_003096_050 Hb_003096_050 Hb_000011_430--Hb_003096_050 Hb_000975_150 Hb_000975_150 Hb_000011_430--Hb_000975_150 Hb_000758_040 Hb_000758_040 Hb_000011_430--Hb_000758_040 Hb_002918_230 Hb_002918_230 Hb_000011_430--Hb_002918_230 Hb_000816_120 Hb_000816_120 Hb_000011_430--Hb_000816_120 Hb_001190_060 Hb_001190_060 Hb_000011_430--Hb_001190_060 Hb_004953_020 Hb_004953_020 Hb_006973_030--Hb_004953_020 Hb_008153_020 Hb_008153_020 Hb_006973_030--Hb_008153_020 Hb_006973_030--Hb_000286_240 Hb_002035_060 Hb_002035_060 Hb_006973_030--Hb_002035_060 Hb_006973_030--Hb_003878_040 Hb_006973_030--Hb_149181_020 Hb_003878_040--Hb_149181_020 Hb_003878_040--Hb_018264_010 Hb_001422_040 Hb_001422_040 Hb_003878_040--Hb_001422_040 Hb_036609_010 Hb_036609_010 Hb_003878_040--Hb_036609_010 Hb_005109_030 Hb_005109_030 Hb_003878_040--Hb_005109_030 Hb_000212_220 Hb_000212_220 Hb_003878_040--Hb_000212_220 Hb_000286_240--Hb_004953_020 Hb_000286_240--Hb_008153_020 Hb_000286_240--Hb_003878_040 Hb_000286_240--Hb_149181_020 Hb_000286_240--Hb_018264_010 Hb_000286_240--Hb_001422_040 Hb_149181_020--Hb_018264_010 Hb_149181_020--Hb_001422_040 Hb_149181_020--Hb_036609_010 Hb_149181_020--Hb_005109_030 Hb_149181_020--Hb_000212_220 Hb_018264_010--Hb_001422_040 Hb_018264_010--Hb_036609_010 Hb_018264_010--Hb_005109_030 Hb_018264_010--Hb_000212_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0242599 0 0.00901615 0.00951027 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110424 0.0217195 0 0.129864 0

CAGE analysis