Hb_000011_430

Information

Type -
Description -
Location Contig11: 446000-453919
Sequence    

Annotation

kegg
ID rcu:RCOM_0044340
description zinc finger protein, putative
nr
ID XP_002533245.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9LJP1
description GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2
trembl
ID B9T4S6
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0044340 PE=4 SV=1
Gene Ontology
ID GO:0016298
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 043_I19r.ab1: 454125-455582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_430 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_003096_050 0.221957859 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000975_150 0.2433959083 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
4 Hb_000758_040 0.2679242012 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
5 Hb_002918_230 0.268452414 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
6 Hb_000816_120 0.2744504945 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
7 Hb_001190_060 0.2761450548 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
8 Hb_004800_170 0.2934475957 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
9 Hb_007416_130 0.2943988259 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
10 Hb_007439_010 0.2963457898 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
11 Hb_007894_250 0.2989156495 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
12 Hb_001279_160 0.3022094016 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003141_020 0.3040388205 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
14 Hb_003636_070 0.3052801816 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000390_260 0.3056859808 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
16 Hb_153470_010 0.3062335684 - - PREDICTED: uncharacterized protein LOC104804963 [Tarenaya hassleriana]
17 Hb_003992_250 0.3094786546 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
18 Hb_000056_330 0.3104908586 - - unnamed protein product [Vitis vinifera]
19 Hb_002311_240 0.3113510138 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
20 Hb_006355_030 0.3146654405 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_430 Hb_000011_430 Hb_003096_050 Hb_003096_050 Hb_000011_430--Hb_003096_050 Hb_000975_150 Hb_000975_150 Hb_000011_430--Hb_000975_150 Hb_000758_040 Hb_000758_040 Hb_000011_430--Hb_000758_040 Hb_002918_230 Hb_002918_230 Hb_000011_430--Hb_002918_230 Hb_000816_120 Hb_000816_120 Hb_000011_430--Hb_000816_120 Hb_001190_060 Hb_001190_060 Hb_000011_430--Hb_001190_060 Hb_003096_050--Hb_001190_060 Hb_000056_330 Hb_000056_330 Hb_003096_050--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_003096_050--Hb_007894_250 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_003096_050--Hb_000975_150 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_000975_150--Hb_007894_250 Hb_000975_150--Hb_000056_330 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_000975_150--Hb_001190_060 Hb_000758_040--Hb_000816_120 Hb_113250_010 Hb_113250_010 Hb_000758_040--Hb_113250_010 Hb_000758_040--Hb_001190_060 Hb_000758_040--Hb_003096_050 Hb_000758_040--Hb_000975_150 Hb_001355_130 Hb_001355_130 Hb_002918_230--Hb_001355_130 Hb_002918_230--Hb_004800_170 Hb_002918_230--Hb_003096_050 Hb_002918_230--Hb_000056_330 Hb_002918_230--Hb_001190_060 Hb_002918_230--Hb_000975_150 Hb_000816_120--Hb_001190_060 Hb_000816_120--Hb_000056_330 Hb_000213_130 Hb_000213_130 Hb_000816_120--Hb_000213_130 Hb_010647_010 Hb_010647_010 Hb_000816_120--Hb_010647_010 Hb_001190_060--Hb_000056_330 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.013655 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0417785 0.032863 0 0.184389 0

CAGE analysis