Hb_005843_030

Information

Type -
Description -
Location Contig5843: 11473-14899
Sequence    

Annotation

kegg
ID rcu:RCOM_1407440
description hypothetical protein
nr
ID XP_012079222.1
description PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
swissprot
ID Q10055
description ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif412 PE=1 SV=1
trembl
ID A0A067KA95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_030 0.0 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
2 Hb_001246_010 0.1459179869 - - -
3 Hb_005784_080 0.1586632668 - - kinase, putative [Ricinus communis]
4 Hb_000997_020 0.1675433061 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
5 Hb_002997_170 0.1740319593 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
6 Hb_004108_020 0.1752696841 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
7 Hb_000172_120 0.1753943456 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
8 Hb_000977_130 0.1809630415 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
9 Hb_065953_010 0.1814261752 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
10 Hb_000049_040 0.1826445789 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
11 Hb_000034_140 0.1834277036 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
12 Hb_001911_030 0.1839213879 - - PREDICTED: disease resistance RPP8-like protein 3 [Jatropha curcas]
13 Hb_002377_040 0.1898017722 - - serine/threonine protein kinase, putative [Ricinus communis]
14 Hb_000424_250 0.1898078999 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
15 Hb_002955_030 0.1900625726 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001135_160 0.1903566937 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
17 Hb_000156_140 0.1913088212 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
18 Hb_000045_070 0.1918789711 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001855_010 0.1919645094 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
20 Hb_000442_160 0.1927586565 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005843_030 Hb_005843_030 Hb_001246_010 Hb_001246_010 Hb_005843_030--Hb_001246_010 Hb_005784_080 Hb_005784_080 Hb_005843_030--Hb_005784_080 Hb_000997_020 Hb_000997_020 Hb_005843_030--Hb_000997_020 Hb_002997_170 Hb_002997_170 Hb_005843_030--Hb_002997_170 Hb_004108_020 Hb_004108_020 Hb_005843_030--Hb_004108_020 Hb_000172_120 Hb_000172_120 Hb_005843_030--Hb_000172_120 Hb_000034_140 Hb_000034_140 Hb_001246_010--Hb_000034_140 Hb_001246_010--Hb_005784_080 Hb_009421_100 Hb_009421_100 Hb_001246_010--Hb_009421_100 Hb_002831_040 Hb_002831_040 Hb_001246_010--Hb_002831_040 Hb_000329_390 Hb_000329_390 Hb_001246_010--Hb_000329_390 Hb_001341_050 Hb_001341_050 Hb_005784_080--Hb_001341_050 Hb_000176_110 Hb_000176_110 Hb_005784_080--Hb_000176_110 Hb_003352_050 Hb_003352_050 Hb_005784_080--Hb_003352_050 Hb_033642_020 Hb_033642_020 Hb_005784_080--Hb_033642_020 Hb_005784_080--Hb_000997_020 Hb_005784_080--Hb_000172_120 Hb_001741_140 Hb_001741_140 Hb_000997_020--Hb_001741_140 Hb_000997_020--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000997_020--Hb_003453_020 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_000905_190 Hb_002997_170--Hb_001741_140 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_004108_020--Hb_000172_120 Hb_005288_160 Hb_005288_160 Hb_004108_020--Hb_005288_160 Hb_007441_340 Hb_007441_340 Hb_004108_020--Hb_007441_340 Hb_004096_170 Hb_004096_170 Hb_004108_020--Hb_004096_170 Hb_023226_060 Hb_023226_060 Hb_004108_020--Hb_023226_060 Hb_004108_020--Hb_003453_020 Hb_000172_120--Hb_007441_340 Hb_000172_120--Hb_004096_170 Hb_000172_120--Hb_003453_020 Hb_001269_150 Hb_001269_150 Hb_000172_120--Hb_001269_150 Hb_002400_220 Hb_002400_220 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.690431 0 0.380792 0.224181 0.94264 1.15911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.564092 0.506808 0.565383 0.231954 0

CAGE analysis