Hb_004724_380

Information

Type -
Description -
Location Contig4724: 238109-238940
Sequence    

Annotation

kegg
ID rcu:RCOM_1282180
description Cold-inducible RNA-binding protein, putative
nr
ID XP_012077851.1
description PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
swissprot
ID Q28IQ9
description Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1
trembl
ID A0A067KA53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13563 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44390: 237244-237479 , PASA_asmbl_44391: 237860-238912
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_380 0.0 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
2 Hb_000419_070 0.1331031911 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
3 Hb_007441_260 0.1365658982 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
4 Hb_000087_130 0.1412198153 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
5 Hb_001053_140 0.1437712376 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
6 Hb_000069_700 0.1441800776 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
7 Hb_072922_020 0.1447894754 - - SNARE-like superfamily protein [Theobroma cacao]
8 Hb_000178_120 0.1467003588 - - PREDICTED: histone H2B [Jatropha curcas]
9 Hb_001329_150 0.1475644018 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
10 Hb_001076_020 0.1479275337 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
11 Hb_002843_140 0.1482867539 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
12 Hb_024074_010 0.1504469534 - - PREDICTED: cytochrome c [Jatropha curcas]
13 Hb_008062_070 0.151060283 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
14 Hb_011609_020 0.1521041586 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000224_140 0.1537943073 - - ribonuclease z, chloroplast, putative [Ricinus communis]
16 Hb_005391_030 0.1544174241 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
17 Hb_011485_020 0.1557108279 - - protein with unknown function [Ricinus communis]
18 Hb_010560_030 0.1557809065 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
19 Hb_002081_030 0.1563242018 - - unnamed protein product [Coffea canephora]
20 Hb_000948_220 0.1564098899 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]

Gene co-expression network

sample Hb_004724_380 Hb_004724_380 Hb_000419_070 Hb_000419_070 Hb_004724_380--Hb_000419_070 Hb_007441_260 Hb_007441_260 Hb_004724_380--Hb_007441_260 Hb_000087_130 Hb_000087_130 Hb_004724_380--Hb_000087_130 Hb_001053_140 Hb_001053_140 Hb_004724_380--Hb_001053_140 Hb_000069_700 Hb_000069_700 Hb_004724_380--Hb_000069_700 Hb_072922_020 Hb_072922_020 Hb_004724_380--Hb_072922_020 Hb_001329_150 Hb_001329_150 Hb_000419_070--Hb_001329_150 Hb_000419_070--Hb_001053_140 Hb_011485_020 Hb_011485_020 Hb_000419_070--Hb_011485_020 Hb_011512_040 Hb_011512_040 Hb_000419_070--Hb_011512_040 Hb_010883_050 Hb_010883_050 Hb_000419_070--Hb_010883_050 Hb_002303_060 Hb_002303_060 Hb_000419_070--Hb_002303_060 Hb_000384_120 Hb_000384_120 Hb_007441_260--Hb_000384_120 Hb_005391_030 Hb_005391_030 Hb_007441_260--Hb_005391_030 Hb_007441_260--Hb_000087_130 Hb_007192_100 Hb_007192_100 Hb_007441_260--Hb_007192_100 Hb_003880_030 Hb_003880_030 Hb_007441_260--Hb_003880_030 Hb_000417_260 Hb_000417_260 Hb_007441_260--Hb_000417_260 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_000087_130--Hb_072922_020 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000087_130--Hb_000384_120 Hb_001053_140--Hb_001329_150 Hb_001053_140--Hb_002303_060 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_000189_240 Hb_000189_240 Hb_001053_140--Hb_000189_240 Hb_005269_080 Hb_005269_080 Hb_001053_140--Hb_005269_080 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_001633_030 Hb_001633_030 Hb_000069_700--Hb_001633_030 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_072922_020--Hb_000384_120 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87081 0.844674 2.42308 3.91404 1.66958 0.151436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.46641 11.0473 5.65353 2.23827 2.66532

CAGE analysis