Hb_003752_110

Information

Type -
Description -
Location Contig3752: 119009-122338
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38329: 118702-122323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_110 0.0 - - -
2 Hb_001754_150 0.1059355891 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
3 Hb_168918_020 0.1065857315 - - pectin acetylesterase, putative [Ricinus communis]
4 Hb_143766_090 0.1078410033 - - 60S ribosomal protein L31B [Hevea brasiliensis]
5 Hb_001623_330 0.1099382733 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
6 Hb_000260_050 0.1132041882 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
7 Hb_001623_370 0.1136221015 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012340_030 0.1141117239 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
9 Hb_000329_690 0.1148380316 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
10 Hb_001405_050 0.1154601054 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
11 Hb_007992_030 0.1160879995 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
12 Hb_005843_110 0.1169133624 - - Caltractin, putative [Ricinus communis]
13 Hb_010449_020 0.1178032492 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
14 Hb_000107_390 0.1181047545 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
15 Hb_001369_650 0.1184038193 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
16 Hb_005535_050 0.1205681825 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
17 Hb_001514_020 0.1217991717 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
18 Hb_000473_040 0.125093633 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
19 Hb_004994_310 0.1254295524 - - Kiwellin, putative [Ricinus communis]
20 Hb_000392_270 0.1255799332 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003752_110 Hb_003752_110 Hb_001754_150 Hb_001754_150 Hb_003752_110--Hb_001754_150 Hb_168918_020 Hb_168918_020 Hb_003752_110--Hb_168918_020 Hb_143766_090 Hb_143766_090 Hb_003752_110--Hb_143766_090 Hb_001623_330 Hb_001623_330 Hb_003752_110--Hb_001623_330 Hb_000260_050 Hb_000260_050 Hb_003752_110--Hb_000260_050 Hb_001623_370 Hb_001623_370 Hb_003752_110--Hb_001623_370 Hb_002477_240 Hb_002477_240 Hb_001754_150--Hb_002477_240 Hb_001019_090 Hb_001019_090 Hb_001754_150--Hb_001019_090 Hb_001804_040 Hb_001804_040 Hb_001754_150--Hb_001804_040 Hb_001754_150--Hb_000260_050 Hb_042202_010 Hb_042202_010 Hb_001754_150--Hb_042202_010 Hb_000392_270 Hb_000392_270 Hb_001754_150--Hb_000392_270 Hb_012340_030 Hb_012340_030 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020 Hb_001514_020 Hb_001514_020 Hb_143766_090--Hb_001514_020 Hb_006501_150 Hb_006501_150 Hb_143766_090--Hb_006501_150 Hb_003688_100 Hb_003688_100 Hb_143766_090--Hb_003688_100 Hb_000141_060 Hb_000141_060 Hb_143766_090--Hb_000141_060 Hb_005527_050 Hb_005527_050 Hb_143766_090--Hb_005527_050 Hb_001405_050 Hb_001405_050 Hb_143766_090--Hb_001405_050 Hb_001369_650 Hb_001369_650 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_003001_060 Hb_003001_060 Hb_001623_330--Hb_003001_060 Hb_001623_330--Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_001623_330--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_001623_330--Hb_000045_130 Hb_007747_090 Hb_007747_090 Hb_000260_050--Hb_007747_090 Hb_000483_160 Hb_000483_160 Hb_000260_050--Hb_000483_160 Hb_004899_220 Hb_004899_220 Hb_000260_050--Hb_004899_220 Hb_000260_050--Hb_002477_240 Hb_000260_050--Hb_000977_080 Hb_000714_020 Hb_000714_020 Hb_001623_370--Hb_000714_020 Hb_001623_370--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_001623_370--Hb_004502_030 Hb_011609_030 Hb_011609_030 Hb_001623_370--Hb_011609_030 Hb_007992_030 Hb_007992_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7878 4.1594 3.42981 0.801 11.1804 13.72
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.8971 17.7205 8.17013 1.73913 2.49934

CAGE analysis