Hb_002759_250

Information

Type rubber biosynthesis
Description Gene Name: Phosphomevalonate kinase
Location Contig2759: 230770-239624
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09680g
description POPTRDRAFT_712033; GHMP kinase family protein
nr
ID AFJ74327.1
description phosphomevalonate kinase [Hevea brasiliensis]
swissprot
ID Q9UT88
description Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1
trembl
ID Q944G1
description Phosphomevalonate kinase OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005524
description probable phosphomevalonate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002759_250 0.0 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
2 Hb_000705_260 0.1141634145 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000696_110 0.1146185103 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
4 Hb_001671_080 0.1170321414 - - amino acid binding protein, putative [Ricinus communis]
5 Hb_005941_010 0.1180965045 - - PREDICTED: protein SAND [Jatropha curcas]
6 Hb_003050_040 0.1214202305 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
7 Hb_000732_260 0.1218237661 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
8 Hb_000028_470 0.1227938545 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
9 Hb_004223_130 0.122822859 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000538_210 0.1231492902 - - ATP binding protein, putative [Ricinus communis]
11 Hb_150069_020 0.1244935132 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
12 Hb_001141_080 0.125041983 - - PREDICTED: protein RDM1 [Jatropha curcas]
13 Hb_094437_070 0.1259457821 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
14 Hb_003226_150 0.1279439114 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
15 Hb_000762_020 0.1282448849 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
16 Hb_010174_130 0.1297641075 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
17 Hb_002681_020 0.1305603478 - - aldose 1-epimerase, putative [Ricinus communis]
18 Hb_000282_060 0.1308825934 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
19 Hb_012760_170 0.1315518931 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
20 Hb_033491_010 0.131889504 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]

Gene co-expression network

sample Hb_002759_250 Hb_002759_250 Hb_000705_260 Hb_000705_260 Hb_002759_250--Hb_000705_260 Hb_000696_110 Hb_000696_110 Hb_002759_250--Hb_000696_110 Hb_001671_080 Hb_001671_080 Hb_002759_250--Hb_001671_080 Hb_005941_010 Hb_005941_010 Hb_002759_250--Hb_005941_010 Hb_003050_040 Hb_003050_040 Hb_002759_250--Hb_003050_040 Hb_000732_260 Hb_000732_260 Hb_002759_250--Hb_000732_260 Hb_009558_020 Hb_009558_020 Hb_000705_260--Hb_009558_020 Hb_004242_100 Hb_004242_100 Hb_000705_260--Hb_004242_100 Hb_000984_190 Hb_000984_190 Hb_000705_260--Hb_000984_190 Hb_001329_230 Hb_001329_230 Hb_000705_260--Hb_001329_230 Hb_003602_040 Hb_003602_040 Hb_000705_260--Hb_003602_040 Hb_006788_070 Hb_006788_070 Hb_000705_260--Hb_006788_070 Hb_000152_140 Hb_000152_140 Hb_000696_110--Hb_000152_140 Hb_000057_060 Hb_000057_060 Hb_000696_110--Hb_000057_060 Hb_000599_120 Hb_000599_120 Hb_000696_110--Hb_000599_120 Hb_000538_210 Hb_000538_210 Hb_000696_110--Hb_000538_210 Hb_010174_130 Hb_010174_130 Hb_000696_110--Hb_010174_130 Hb_002357_040 Hb_002357_040 Hb_000696_110--Hb_002357_040 Hb_004223_130 Hb_004223_130 Hb_001671_080--Hb_004223_130 Hb_003052_100 Hb_003052_100 Hb_001671_080--Hb_003052_100 Hb_158092_070 Hb_158092_070 Hb_001671_080--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_001671_080--Hb_000975_290 Hb_007908_020 Hb_007908_020 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020 Hb_005941_010--Hb_000152_140 Hb_005245_090 Hb_005245_090 Hb_005941_010--Hb_005245_090 Hb_005941_010--Hb_004242_100 Hb_005941_010--Hb_003050_040 Hb_005941_010--Hb_000696_110 Hb_005941_010--Hb_000984_190 Hb_033491_010 Hb_033491_010 Hb_003050_040--Hb_033491_010 Hb_003050_040--Hb_004242_100 Hb_003352_050 Hb_003352_050 Hb_003050_040--Hb_003352_050 Hb_003050_040--Hb_005245_090 Hb_002942_030 Hb_002942_030 Hb_003050_040--Hb_002942_030 Hb_000732_260--Hb_033491_010 Hb_000282_060 Hb_000282_060 Hb_000732_260--Hb_000282_060 Hb_002249_140 Hb_002249_140 Hb_000732_260--Hb_002249_140 Hb_000272_100 Hb_000272_100 Hb_000732_260--Hb_000272_100 Hb_001269_150 Hb_001269_150 Hb_000732_260--Hb_001269_150 Hb_001811_150 Hb_001811_150 Hb_000732_260--Hb_001811_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
158.722 9.3543 16.195 13.7158 78.6325 111.836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.268 51.3441 79.5415 36.8281 19.0498

CAGE analysis