Hb_002615_110

Information

Type -
Description -
Location Contig2615: 115309-121664
Sequence    

Annotation

kegg
ID rcu:RCOM_1478210
description Phospholipase A22 (EC:3.1.1.4)
nr
ID XP_012065893.1
description PREDICTED: uncharacterized protein LOC105628989 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22780 PE=4 SV=1
Gene Ontology
ID GO:0004623
description phospholipase a2 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27354: 115382-117632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_110 0.0 - - PREDICTED: uncharacterized protein LOC105628989 [Jatropha curcas]
2 Hb_000002_340 0.1311172429 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
3 Hb_003057_100 0.1350303059 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
4 Hb_000613_090 0.1358210327 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]
5 Hb_000487_110 0.140812446 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
6 Hb_001307_220 0.1413804635 - - PREDICTED: glutathione S-transferase omega-like 2 [Jatropha curcas]
7 Hb_004242_060 0.1418562491 - - PREDICTED: nicotinamidase 2-like [Jatropha curcas]
8 Hb_005116_160 0.1434907722 transcription factor TF Family: TRAF -
9 Hb_154623_010 0.1452262723 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
10 Hb_095595_010 0.1476863066 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
11 Hb_003749_010 0.1482039503 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005867_060 0.1487044466 - - PREDICTED: NADPH--cytochrome P450 reductase [Jatropha curcas]
13 Hb_150360_030 0.149496973 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
14 Hb_000696_090 0.1495074406 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
15 Hb_000000_270 0.1496505067 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
16 Hb_005288_190 0.1512261417 - - PREDICTED: exportin-4 [Jatropha curcas]
17 Hb_000566_200 0.1523176663 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
18 Hb_011883_010 0.1524239688 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
19 Hb_011671_430 0.152646325 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
20 Hb_000120_270 0.152814928 - - PREDICTED: histone deacetylase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002615_110 Hb_002615_110 Hb_000002_340 Hb_000002_340 Hb_002615_110--Hb_000002_340 Hb_003057_100 Hb_003057_100 Hb_002615_110--Hb_003057_100 Hb_000613_090 Hb_000613_090 Hb_002615_110--Hb_000613_090 Hb_000487_110 Hb_000487_110 Hb_002615_110--Hb_000487_110 Hb_001307_220 Hb_001307_220 Hb_002615_110--Hb_001307_220 Hb_004242_060 Hb_004242_060 Hb_002615_110--Hb_004242_060 Hb_000930_030 Hb_000930_030 Hb_000002_340--Hb_000930_030 Hb_000732_010 Hb_000732_010 Hb_000002_340--Hb_000732_010 Hb_000958_110 Hb_000958_110 Hb_000002_340--Hb_000958_110 Hb_002107_030 Hb_002107_030 Hb_000002_340--Hb_002107_030 Hb_000002_340--Hb_003057_100 Hb_001396_200 Hb_001396_200 Hb_000002_340--Hb_001396_200 Hb_000032_270 Hb_000032_270 Hb_003057_100--Hb_000032_270 Hb_032202_190 Hb_032202_190 Hb_003057_100--Hb_032202_190 Hb_029866_090 Hb_029866_090 Hb_003057_100--Hb_029866_090 Hb_005305_080 Hb_005305_080 Hb_003057_100--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_003057_100--Hb_000510_130 Hb_000059_330 Hb_000059_330 Hb_003057_100--Hb_000059_330 Hb_000853_420 Hb_000853_420 Hb_000613_090--Hb_000853_420 Hb_000038_170 Hb_000038_170 Hb_000613_090--Hb_000038_170 Hb_011671_430 Hb_011671_430 Hb_000613_090--Hb_011671_430 Hb_022250_030 Hb_022250_030 Hb_000613_090--Hb_022250_030 Hb_000034_100 Hb_000034_100 Hb_000613_090--Hb_000034_100 Hb_000613_090--Hb_000487_110 Hb_000487_110--Hb_000034_100 Hb_008406_110 Hb_008406_110 Hb_000487_110--Hb_008406_110 Hb_000487_110--Hb_000038_170 Hb_005276_210 Hb_005276_210 Hb_000487_110--Hb_005276_210 Hb_054865_100 Hb_054865_100 Hb_000487_110--Hb_054865_100 Hb_000317_050 Hb_000317_050 Hb_001307_220--Hb_000317_050 Hb_005116_160 Hb_005116_160 Hb_001307_220--Hb_005116_160 Hb_000318_250 Hb_000318_250 Hb_001307_220--Hb_000318_250 Hb_001546_080 Hb_001546_080 Hb_001307_220--Hb_001546_080 Hb_000684_470 Hb_000684_470 Hb_001307_220--Hb_000684_470 Hb_002184_110 Hb_002184_110 Hb_001307_220--Hb_002184_110 Hb_021254_030 Hb_021254_030 Hb_004242_060--Hb_021254_030 Hb_015941_030 Hb_015941_030 Hb_004242_060--Hb_015941_030 Hb_000808_040 Hb_000808_040 Hb_004242_060--Hb_000808_040 Hb_004242_060--Hb_000613_090 Hb_001014_010 Hb_001014_010 Hb_004242_060--Hb_001014_010 Hb_150360_030 Hb_150360_030 Hb_004242_060--Hb_150360_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4232 36.2982 18.4649 22.9762 44.0913 35.1933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.0813 24.6348 25.6122 10.7255 32.7585

CAGE analysis