Hb_001295_020

Information

Type -
Description -
Location Contig1295: 7608-12520
Sequence    

Annotation

kegg
ID tcc:TCM_027312
description hypothetical protein
nr
ID XP_007023331.1
description Uncharacterized protein TCM_027312 [Theobroma cacao]
swissprot
ID F4I171
description Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana GN=MED15A PE=1 SV=1
trembl
ID A0A061G942
description Uncharacterized protein OS=Theobroma cacao GN=TCM_027312 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08846: 7648-10680 , PASA_asmbl_08847: 7648-12526 , PASA_asmbl_08848: 12003-12513 , PASA_asmbl_08849: 8902-9334
cDNA
(Sanger)
(ID:Location)		 048_D07.ab1: 7964-10474 , 048_H12.ab1: 7953-10474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001295_020 0.0 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
2 Hb_039837_010 0.0825707363 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
3 Hb_001840_080 0.086236575 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
4 Hb_000120_800 0.0864411753 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
5 Hb_000190_140 0.0870218697 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
6 Hb_001001_060 0.0888241425 - - -
7 Hb_009111_050 0.0942800756 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
8 Hb_000017_120 0.0947255028 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
9 Hb_005662_030 0.0960942356 - - protein with unknown function [Ricinus communis]
10 Hb_001017_040 0.0993687125 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
11 Hb_000009_170 0.101053762 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
12 Hb_011310_070 0.1012936592 - - ADP,ATP carrier protein, putative [Ricinus communis]
13 Hb_004223_130 0.1023727748 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004204_020 0.1033426481 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
15 Hb_001006_170 0.1046896108 - - Endonuclease V, putative [Ricinus communis]
16 Hb_008453_150 0.10628956 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
17 Hb_001454_210 0.1067882009 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
18 Hb_005215_080 0.1074684619 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
19 Hb_000000_080 0.1083232739 - - lipoate-protein ligase B, putative [Ricinus communis]
20 Hb_012760_170 0.1084884249 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001295_020 Hb_001295_020 Hb_039837_010 Hb_039837_010 Hb_001295_020--Hb_039837_010 Hb_001840_080 Hb_001840_080 Hb_001295_020--Hb_001840_080 Hb_000120_800 Hb_000120_800 Hb_001295_020--Hb_000120_800 Hb_000190_140 Hb_000190_140 Hb_001295_020--Hb_000190_140 Hb_001001_060 Hb_001001_060 Hb_001295_020--Hb_001001_060 Hb_009111_050 Hb_009111_050 Hb_001295_020--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_039837_010--Hb_002811_360 Hb_003058_130 Hb_003058_130 Hb_039837_010--Hb_003058_130 Hb_039837_010--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_039837_010--Hb_001454_210 Hb_028872_140 Hb_028872_140 Hb_039837_010--Hb_028872_140 Hb_000321_070 Hb_000321_070 Hb_039837_010--Hb_000321_070 Hb_001840_080--Hb_000120_800 Hb_001047_020 Hb_001047_020 Hb_001840_080--Hb_001047_020 Hb_002215_050 Hb_002215_050 Hb_001840_080--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_001840_080--Hb_003638_140 Hb_000749_150 Hb_000749_150 Hb_001840_080--Hb_000749_150 Hb_005306_110 Hb_005306_110 Hb_001840_080--Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000009_170 Hb_000009_170 Hb_000120_800--Hb_000009_170 Hb_022137_060 Hb_022137_060 Hb_000120_800--Hb_022137_060 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_000190_140--Hb_000120_950 Hb_000190_140--Hb_009111_050 Hb_000190_140--Hb_001454_210 Hb_005062_070 Hb_005062_070 Hb_000190_140--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_000190_140--Hb_015306_020 Hb_001001_060--Hb_000009_170 Hb_004225_020 Hb_004225_020 Hb_001001_060--Hb_004225_020 Hb_001001_060--Hb_000120_800 Hb_004204_020 Hb_004204_020 Hb_001001_060--Hb_004204_020 Hb_001001_060--Hb_000190_140 Hb_002027_120 Hb_002027_120 Hb_001001_060--Hb_002027_120 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_001454_210 Hb_009111_050--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.393 7.92379 10.2589 9.8771 26.4139 43.3463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2529 21.6234 32.8925 19.9857 6.74042

CAGE analysis