Hb_000030_220

Information

Type -
Description -
Location Contig30: 163848-166548
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06030g
description POPTRDRAFT_750703; hypothetical protein
nr
ID XP_012092692.1
description PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J952
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06858 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31517: 163842-164620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_220 0.0 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
2 Hb_007735_030 0.0943728353 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
3 Hb_002596_040 0.0972615071 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
4 Hb_001009_300 0.1046022027 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
5 Hb_002296_040 0.1056480575 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_005615_080 0.108855533 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
7 Hb_000003_730 0.1141427844 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
8 Hb_002260_150 0.1168439884 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
9 Hb_005400_030 0.1191122875 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
10 Hb_008511_110 0.1227532779 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
11 Hb_172706_030 0.1236078155 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
12 Hb_000326_090 0.1262944508 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
13 Hb_002662_030 0.1266728379 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
14 Hb_000648_030 0.1267870592 - - hypothetical protein PHAVU_002G055100g [Phaseolus vulgaris]
15 Hb_000120_590 0.1269593011 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
16 Hb_000086_550 0.1269903225 - - Os02g0814700 [Oryza sativa Japonica Group]
17 Hb_004032_100 0.1281171471 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
18 Hb_007441_270 0.1286394209 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
19 Hb_000707_030 0.1293664699 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
20 Hb_140543_010 0.1307252931 - - -

Gene co-expression network

sample Hb_000030_220 Hb_000030_220 Hb_007735_030 Hb_007735_030 Hb_000030_220--Hb_007735_030 Hb_002596_040 Hb_002596_040 Hb_000030_220--Hb_002596_040 Hb_001009_300 Hb_001009_300 Hb_000030_220--Hb_001009_300 Hb_002296_040 Hb_002296_040 Hb_000030_220--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_000030_220--Hb_005615_080 Hb_000003_730 Hb_000003_730 Hb_000030_220--Hb_000003_730 Hb_004032_100 Hb_004032_100 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_007735_030--Hb_002296_040 Hb_180301_010 Hb_180301_010 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030 Hb_002596_040--Hb_002296_040 Hb_076693_030 Hb_076693_030 Hb_002596_040--Hb_076693_030 Hb_008695_040 Hb_008695_040 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002662_030 Hb_002662_030 Hb_002596_040--Hb_002662_030 Hb_000086_550 Hb_000086_550 Hb_001009_300--Hb_000086_550 Hb_001009_300--Hb_005400_030 Hb_003623_050 Hb_003623_050 Hb_001009_300--Hb_003623_050 Hb_001009_300--Hb_001421_060 Hb_001009_300--Hb_005615_080 Hb_001117_090 Hb_001117_090 Hb_001009_300--Hb_001117_090 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_002296_040--Hb_000707_030 Hb_010423_040 Hb_010423_040 Hb_005615_080--Hb_010423_040 Hb_005615_080--Hb_002260_150 Hb_005615_080--Hb_002296_040 Hb_021238_050 Hb_021238_050 Hb_005615_080--Hb_021238_050 Hb_005615_080--Hb_000003_730 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_000003_730--Hb_004032_100 Hb_031089_040 Hb_031089_040 Hb_000003_730--Hb_031089_040 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_000003_730--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_000003_730--Hb_004502_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4438 6.54377 6.2131 35.3312 20.1323 70.9531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.9992 70.3176 26.7301 42.5185 12.373

CAGE analysis