Gene annotation
Transcriptome id Sobic.001G239500.2
Synonym AtSS2, SS2
Functional annotation starch synthase, putative, expressed
UniProt A9YWU0 , A0A1Z5S724
Pfam PF00534 PF08323
Panther DB PTHR12526 PTHR12526:SF409
NCBI CDD -
KEGG Orthology K00703; starch synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01180 : starch synthase 2
RAP-DB (Rice) LOC_Os10g30156.1 : starch synthase, putative, expressed
MaizeGDB (Corn) Zm00025a017757
Brachypodium KQJ96814
Barley HORVU1Hr1G035960.27 , HORVU1Hr1G035960.26 , HORVU1Hr1G035960.25 , HORVU1Hr1G035960.24 , HORVU1Hr1G035960.23 , HORVU1Hr1G035960.22 , HORVU1Hr1G035960.21 , HORVU1Hr1G035960.20 , HORVU1Hr1G035960.29 , HORVU1Hr1G035960.28 , HORVU1Hr1G035960.30 , HORVU1Hr1G035960.18 , HORVU1Hr1G035960.19 , HORVU1Hr1G035960.16 , HORVU1Hr1G035960.17 , HORVU1Hr1G035960.14 , HORVU1Hr1G035960.15 , HORVU1Hr1G035960.12 , HORVU1Hr1G035960.13 , HORVU1Hr1G035960.10 , HORVU1Hr1G035960.11 , HORVU1Hr1G035960.8 , HORVU1Hr1G035960.9 , HORVU1Hr1G035960.4 , HORVU1Hr1G035960.5 , HORVU1Hr1G035960.6 , HORVU1Hr1G035960.7 , HORVU1Hr1G035960.1 , HORVU1Hr1G035960.2 , HORVU1Hr1G035960.3
Wheat TraesCS1D02G138100 , TraesCS1D02G138100 , TraesCS1D02G138100 , TraesCS1D02G138100 , TraesCS1D02G138100 , TraesCS1A02G137200 , TraesCS1A02G137200 , TraesCS1A02G137200 , TraesCS1A02G137200 , TraesCS1A02G137200 , TraesCS1B02G155700 , TraesCS1B02G155700 , TraesCS1B02G155700 , TraesCS1B02G155700 , TraesCS1B02G155700
Populus -


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cDNA sequences
Sobic.001G239500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G343500 OsCttP2 - Putative C-terminal processing peptidase homologue, expressed -
2 Sobic.002G273300 B-box zinc finger family protein, putative, expressed -
3 Sobic.001G514800 serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
4 Sobic.008G168300 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
5 Sobic.003G004200 glutaredoxin, putative, expressed -
6 Sobic.009G054900 relA-SpoT like protein RSH4, putative, expressed -
7 Sobic.001G207700 expressed protein -
8 Sobic.009G249600 transcriptional regulator, putative, expressed K07735: putative transcriptional regulator
9 Sobic.007G047400 MYB family transcription factor, putative, expressed K12133: MYB-related transcription factor LHY
10 Sobic.001G017300 RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
11 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
12 Sobic.003G009700 cytochrome P450, putative, expressed -
13 Sobic.004G327700 tetratricopeptide repeat domain containing protein, putative, expressed K03255: TIF31, protein TIF31
14 Sobic.002G172700 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
15 Sobic.002G077100 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
16 Sobic.001G484800 acetyltransferase, GNAT family, putative, expressed -
17 Sobic.001G134100 5-AMP-activated protein kinase-related, putative, expressed -
18 Sobic.004G347800 OTU-like cysteine protease family protein, putative, expressed -
19 Sobic.001G468700 expressed protein -
20 Sobic.003G276300 zinc knuckle domain containing protein, expressed -


Gene co-expression network
sample Sobic001G239500 Sobic001G239500 Sobic004G343500 Sobic004G343500 Sobic001G239500--Sobic004G343500 Sobic002G273300 Sobic002G273300 Sobic001G239500--Sobic002G273300 Sobic001G514800 Sobic001G514800 Sobic001G239500--Sobic001G514800 Sobic008G168300 Sobic008G168300 Sobic001G239500--Sobic008G168300 Sobic003G004200 Sobic003G004200 Sobic001G239500--Sobic003G004200 Sobic009G054900 Sobic009G054900 Sobic001G239500--Sobic009G054900 Sobic001G207700 Sobic001G207700 Sobic001G239500--Sobic001G207700 Sobic009G249600 Sobic009G249600 Sobic001G239500--Sobic009G249600 Sobic007G047400 Sobic007G047400 Sobic001G239500--Sobic007G047400 Sobic004G343500--Sobic002G273300 Sobic004G343500--Sobic009G054900 Sobic004G343500--Sobic001G239500 Sobic004G343500--Sobic009G249600 Sobic001G134100 Sobic001G134100 Sobic004G343500--Sobic001G134100 Sobic004G351700 Sobic004G351700 Sobic004G343500--Sobic004G351700 Sobic004G343500--Sobic007G047400 Sobic006G244000 Sobic006G244000 Sobic004G343500--Sobic006G244000 Sobic007G140800 Sobic007G140800 Sobic004G343500--Sobic007G140800 Sobic002G273300--Sobic004G343500 Sobic002G273300--Sobic007G047400 Sobic002G273300--Sobic009G249600 Sobic002G273300--Sobic001G239500 Sobic001G305600 Sobic001G305600 Sobic002G273300--Sobic001G305600 Sobic002G273300--Sobic003G004200 Sobic002G273300--Sobic004G351700 Sobic002G273300--Sobic009G054900 Sobic003G009700 Sobic003G009700 Sobic002G273300--Sobic003G009700 Sobic001G017300 Sobic001G017300 Sobic001G514800--Sobic001G017300 Sobic001G514800--Sobic001G239500 Sobic002G172700 Sobic002G172700 Sobic001G514800--Sobic002G172700 Sobic001G514800--Sobic009G054900 Sobic001G020100 Sobic001G020100 Sobic001G514800--Sobic001G020100 Sobic004G035900 Sobic004G035900 Sobic001G514800--Sobic004G035900 Sobic006G130300 Sobic006G130300 Sobic001G514800--Sobic006G130300 Sobic004G356400 Sobic004G356400 Sobic001G514800--Sobic004G356400 Sobic007G136200 Sobic007G136200 Sobic001G514800--Sobic007G136200 Sobic004G355700 Sobic004G355700 Sobic008G168300--Sobic004G355700 Sobic008G168300--Sobic001G017300 Sobic002G121600 Sobic002G121600 Sobic008G168300--Sobic002G121600 Sobic005G045000 Sobic005G045000 Sobic008G168300--Sobic005G045000 Sobic003G229300 Sobic003G229300 Sobic008G168300--Sobic003G229300 Sobic001G468700 Sobic001G468700 Sobic008G168300--Sobic001G468700 Sobic010G085100 Sobic010G085100 Sobic008G168300--Sobic010G085100 Sobic008G168300--Sobic001G239500 Sobic008G168300--Sobic001G514800 Sobic003G004200--Sobic001G468700 Sobic003G004200--Sobic003G009700 Sobic004G028500 Sobic004G028500 Sobic003G004200--Sobic004G028500 Sobic001G065600 Sobic001G065600 Sobic003G004200--Sobic001G065600 Sobic003G004200--Sobic004G356400 Sobic003G313300 Sobic003G313300 Sobic003G004200--Sobic003G313300 Sobic003G004200--Sobic005G045000 Sobic005G206300 Sobic005G206300 Sobic003G004200--Sobic005G206300 Sobic003G004200--Sobic001G017300 Sobic001G329400 Sobic001G329400 Sobic009G054900--Sobic001G329400 Sobic010G251700 Sobic010G251700 Sobic009G054900--Sobic010G251700 Sobic009G054900--Sobic004G343500 Sobic009G054900--Sobic007G140800 Sobic001G178250 Sobic001G178250 Sobic009G054900--Sobic001G178250 Sobic009G054900--Sobic004G356400 Sobic009G054900--Sobic006G130300 Sobic009G054900--Sobic001G514800 Sobic006G093800 Sobic006G093800 Sobic009G054900--Sobic006G093800 Sobic001G484800 Sobic001G484800 Sobic001G207700--Sobic001G484800 Sobic001G207700--Sobic001G239500 Sobic001G207700--Sobic003G009700 Sobic006G225200 Sobic006G225200 Sobic001G207700--Sobic006G225200 Sobic006G205100 Sobic006G205100 Sobic001G207700--Sobic006G205100 Sobic001G207700--Sobic002G121600 Sobic002G394400 Sobic002G394400 Sobic001G207700--Sobic002G394400 Sobic006G173000 Sobic006G173000 Sobic001G207700--Sobic006G173000 Sobic002G401100 Sobic002G401100 Sobic001G207700--Sobic002G401100 Sobic009G249600--Sobic002G273300 Sobic009G249600--Sobic004G351700 Sobic009G249600--Sobic006G244000 Sobic009G249600--Sobic004G343500 Sobic009G249600--Sobic003G009700 Sobic009G249600--Sobic001G239500 Sobic009G249600--Sobic001G134100 Sobic009G249600--Sobic003G004200 Sobic009G249600--Sobic009G054900 Sobic007G047400--Sobic003G313300 Sobic007G047400--Sobic002G273300 Sobic003G021100 Sobic003G021100 Sobic007G047400--Sobic003G021100 Sobic004G281800 Sobic004G281800 Sobic007G047400--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic007G047400--Sobic005G101200 Sobic007G047400--Sobic005G206300 Sobic010G275700 Sobic010G275700 Sobic007G047400--Sobic010G275700 Sobic010G176200 Sobic010G176200 Sobic007G047400--Sobic010G176200 Sobic007G047400--Sobic001G017300
Octagon: transcription factors


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