Gene annotation
Transcriptome id Sobic.009G207500.2,Sobic.009G207500.1
Synonym
Functional annotation OsFBX238 - F-box domain containing protein, expressed
UniProt A0A1B6P9R0
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF142
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G30790 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os07g35060.1,LOC_Os07g35060.2 : OsFBX238 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.009G207500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G090500 - -
2 Sobic.006G271400 methyl-CpG binding domain containing protein, expressed -
3 Sobic.002G053100 RNA recognition motif containing protein, expressed -
4 Sobic.010G209300 expressed protein -
5 Sobic.006G031000 MYB family transcription factor, putative, expressed -
6 Sobic.009G021300 Jacalin-like lectin domain containing protein, putative, expressed -
7 Sobic.005G075000 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.001G142600 OsFBX103 - F-box domain containing protein, expressed -
9 Sobic.002G408700 OsFBX259 - F-box domain containing protein, expressed -
10 Sobic.008G001700 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659911)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
11 Sobic.005G001500 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@Phylogenetic analysis of cloned SbDof genes along with other reported Dof proteins. The 3D structural prediction of SbDof proteins based on multiple threading method.(PubMedID : 22476870)@"PBF1(Ortholog in maize:Lang et al., 2014)"(PubMedID : 31659895)@Upregulated in response to drought and salt stress(PubMedID : 27230576)@dof zinc finger domain containing protein, putative, expressed -
12 Sobic.010G102900 protein of unknown function DUF1675 domain containing protein, expressed -
13 Sobic.008G071900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
14 Sobic.002G166800 RNA recognition motif containing protein, putative, expressed -
15 Sobic.007G147300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
16 Sobic.005G074800 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.005G148600 - -
18 Sobic.006G117300 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
19 Sobic.005G074900 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.007G122932 - -


Gene co-expression network
sample Sobic009G207500 Sobic009G207500 Sobic005G090500 Sobic005G090500 Sobic009G207500--Sobic005G090500 Sobic006G271400 Sobic006G271400 Sobic009G207500--Sobic006G271400 Sobic002G053100 Sobic002G053100 Sobic009G207500--Sobic002G053100 Sobic010G209300 Sobic010G209300 Sobic009G207500--Sobic010G209300 Sobic006G031000 Sobic006G031000 Sobic009G207500--Sobic006G031000 Sobic009G021300 Sobic009G021300 Sobic009G207500--Sobic009G021300 Sobic005G075000 Sobic005G075000 Sobic009G207500--Sobic005G075000 Sobic001G142600 Sobic001G142600 Sobic009G207500--Sobic001G142600 Sobic002G408700 Sobic002G408700 Sobic009G207500--Sobic002G408700 Sobic005G074800 Sobic005G074800 Sobic005G090500--Sobic005G074800 Sobic005G148600 Sobic005G148600 Sobic005G090500--Sobic005G148600 Sobic005G090500--Sobic002G053100 Sobic004G196200 Sobic004G196200 Sobic005G090500--Sobic004G196200 Sobic005G090500--Sobic006G271400 Sobic004G171500 Sobic004G171500 Sobic005G090500--Sobic004G171500 Sobic006G064700 Sobic006G064700 Sobic005G090500--Sobic006G064700 Sobic008G001700 Sobic008G001700 Sobic005G090500--Sobic008G001700 Sobic005G074900 Sobic005G074900 Sobic005G090500--Sobic005G074900 Sobic006G271400--Sobic005G075000 Sobic006G271400--Sobic010G209300 Sobic006G271400--Sobic005G090500 Sobic006G271400--Sobic006G031000 Sobic010G058000 Sobic010G058000 Sobic006G271400--Sobic010G058000 Sobic006G271400--Sobic005G074900 Sobic006G271400--Sobic002G408700 Sobic006G271400--Sobic002G053100 Sobic003G363300 Sobic003G363300 Sobic006G271400--Sobic003G363300 Sobic006G104800 Sobic006G104800 Sobic002G053100--Sobic006G104800 Sobic002G053100--Sobic001G142600 Sobic001G392900 Sobic001G392900 Sobic002G053100--Sobic001G392900 Sobic003G063900 Sobic003G063900 Sobic002G053100--Sobic003G063900 Sobic002G053100--Sobic005G090500 Sobic010G102900 Sobic010G102900 Sobic002G053100--Sobic010G102900 Sobic003G227800 Sobic003G227800 Sobic002G053100--Sobic003G227800 Sobic008G071900 Sobic008G071900 Sobic002G053100--Sobic008G071900 Sobic008G168400 Sobic008G168400 Sobic002G053100--Sobic008G168400 Sobic010G209300--Sobic002G408700 Sobic007G122932 Sobic007G122932 Sobic010G209300--Sobic007G122932 Sobic010G209300--Sobic009G021300 Sobic003G291100 Sobic003G291100 Sobic010G209300--Sobic003G291100 Sobic005G001500 Sobic005G001500 Sobic010G209300--Sobic005G001500 Sobic010G209300--Sobic006G271400 Sobic010G209300--Sobic001G142600 Sobic007G147300 Sobic007G147300 Sobic010G209300--Sobic007G147300 Sobic010G209300--Sobic010G058000 Sobic002G166800 Sobic002G166800 Sobic006G031000--Sobic002G166800 Sobic010G010300 Sobic010G010300 Sobic006G031000--Sobic010G010300 Sobic006G117300 Sobic006G117300 Sobic006G031000--Sobic006G117300 Sobic002G101200 Sobic002G101200 Sobic006G031000--Sobic002G101200 Sobic002G267700 Sobic002G267700 Sobic006G031000--Sobic002G267700 Sobic009G139500 Sobic009G139500 Sobic006G031000--Sobic009G139500 Sobic005G032500 Sobic005G032500 Sobic006G031000--Sobic005G032500 Sobic006G031000--Sobic001G392900 Sobic006G031000--Sobic002G053100 Sobic009G021300--Sobic005G001500 Sobic009G021300--Sobic007G122932 Sobic009G021300--Sobic002G408700 Sobic009G021300--Sobic010G102900 Sobic009G021300--Sobic008G001700 Sobic009G021300--Sobic008G071900 Sobic009G021300--Sobic007G147300 Sobic007G123000 Sobic007G123000 Sobic009G021300--Sobic007G123000 Sobic009G021300--Sobic003G227800 Sobic005G075000--Sobic006G271400 Sobic005G075000--Sobic010G209300 Sobic005G075000--Sobic006G031000 Sobic005G003100 Sobic005G003100 Sobic005G075000--Sobic005G003100 Sobic009G013200 Sobic009G013200 Sobic005G075000--Sobic009G013200 Sobic005G075000--Sobic007G122932 Sobic001G330600 Sobic001G330600 Sobic005G075000--Sobic001G330600 Sobic009G051201 Sobic009G051201 Sobic005G075000--Sobic009G051201 Sobic005G075000--Sobic003G291100 Sobic001G142600--Sobic003G227800 Sobic001G142600--Sobic010G102900 Sobic001G142600--Sobic006G104800 Sobic001G142600--Sobic003G063900 Sobic001G142600--Sobic008G071900 Sobic001G142600--Sobic005G001500 Sobic001G142600--Sobic002G053100 Sobic001G142600--Sobic002G408700 Sobic005G056300 Sobic005G056300 Sobic001G142600--Sobic005G056300 Sobic002G408700--Sobic005G001500 Sobic002G408700--Sobic010G209300 Sobic002G408700--Sobic009G021300 Sobic002G408700--Sobic001G142600 Sobic002G408700--Sobic007G122932 Sobic010G181900 Sobic010G181900 Sobic002G408700--Sobic010G181900 Sobic002G408700--Sobic010G102900 Sobic002G408700--Sobic003G291100 Sobic002G408700--Sobic003G227800
Octagon: transcription factors


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