Gene annotation
Transcriptome id Sobic.009G179200.1
Synonym Sb09g023960
Functional annotation endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
UniProt C5YZY3
Pfam PF13850 PF07970
Panther DB PTHR10984 PTHR10984:SF34
NCBI CDD KOG2667; COPII vesicle protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G36050 : Endoplasmic reticulum vesicle transporter protein
RAP-DB (Rice) LOC_Os05g41120.1 : endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a044064 , Zm00025a020212 , Zm00025a037828 , Zm00025a011145
Brachypodium KQJ82929 , KQJ82928 , KQK05669 , KQK05671 , KQK05670 , KQJ82931 , KQJ82932 , KQJ82934 , PNT61210 , PNT61211
Barley HORVU0Hr1G030440.1 , HORVU0Hr1G030440.2 , HORVU1Hr1G068580.1 , HORVU1Hr1G068580.2 , HORVU1Hr1G068580.3 , HORVU4Hr1G052080.1 , HORVU2Hr1G079830.9 , HORVU2Hr1G079830.3 , HORVU2Hr1G079830.2 , HORVU2Hr1G079830.5 , HORVU2Hr1G079830.4 , HORVU2Hr1G079830.7 , HORVU2Hr1G079830.6
Wheat TraesCS2B02G339700 , TraesCS1B02G318400 , TraesCS2B02G339700 , TraesCS2D02G319700 , TraesCS4B02G177000 , TraesCS1D02G307100 , TraesCS2A02G341900 , TraesCS2A02G341900 , TraesCS4D02G178700 , TraesCS4D02G178700 , TraesCS4D02G178700 , TraesCS4A02G127700 , TraesCS1A02G307700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G179200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G049200 AMP-binding enzyme, putative, expressed -
2 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
3 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
4 Sobic.003G261400 DUF292 domain containing protein, expressed -
5 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
6 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
7 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
8 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
9 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
10 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
11 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
12 Sobic.004G132300 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
13 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
14 Sobic.004G272300 expressed protein -
15 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
16 Sobic.007G221100 GRAM and C2 domains containing protein, putative, expressed -
17 Sobic.003G261500 lipase, putative, expressed -
18 Sobic.005G176000 zinc finger family protein, putative, expressed -
19 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
20 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3


Gene co-expression network
sample Sobic009G179200 Sobic009G179200 Sobic001G049200 Sobic001G049200 Sobic009G179200--Sobic001G049200 Sobic002G294200 Sobic002G294200 Sobic009G179200--Sobic002G294200 Sobic001G403700 Sobic001G403700 Sobic009G179200--Sobic001G403700 Sobic003G261400 Sobic003G261400 Sobic009G179200--Sobic003G261400 Sobic002G242500 Sobic002G242500 Sobic009G179200--Sobic002G242500 Sobic004G130900 Sobic004G130900 Sobic009G179200--Sobic004G130900 Sobic007G132700 Sobic007G132700 Sobic009G179200--Sobic007G132700 Sobic001G078800 Sobic001G078800 Sobic009G179200--Sobic001G078800 Sobic010G062800 Sobic010G062800 Sobic009G179200--Sobic010G062800 Sobic001G049200--Sobic009G179200 Sobic002G114800 Sobic002G114800 Sobic001G049200--Sobic002G114800 Sobic010G161450 Sobic010G161450 Sobic001G049200--Sobic010G161450 Sobic001G049200--Sobic002G242500 Sobic007G221100 Sobic007G221100 Sobic001G049200--Sobic007G221100 Sobic001G049200--Sobic002G294200 Sobic004G132300 Sobic004G132300 Sobic001G049200--Sobic004G132300 Sobic006G176600 Sobic006G176600 Sobic001G049200--Sobic006G176600 Sobic007G098400 Sobic007G098400 Sobic001G049200--Sobic007G098400 Sobic002G294200--Sobic002G242500 Sobic004G274400 Sobic004G274400 Sobic002G294200--Sobic004G274400 Sobic002G294200--Sobic009G179200 Sobic001G283200 Sobic001G283200 Sobic002G294200--Sobic001G283200 Sobic002G294200--Sobic006G176600 Sobic006G148200 Sobic006G148200 Sobic002G294200--Sobic006G148200 Sobic010G193900 Sobic010G193900 Sobic002G294200--Sobic010G193900 Sobic006G281800 Sobic006G281800 Sobic002G294200--Sobic006G281800 Sobic010G064600 Sobic010G064600 Sobic002G294200--Sobic010G064600 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic002G242500--Sobic002G294200 Sobic002G242500--Sobic007G098400 Sobic004G145200 Sobic004G145200 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic002G242500--Sobic007G221100 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic002G400000 Sobic002G400000 Sobic004G130900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic004G130900--Sobic004G327300 Sobic004G130900--Sobic003G261400 Sobic003G367451 Sobic003G367451 Sobic004G130900--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G130900--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G130900--Sobic007G096700 Sobic009G198500 Sobic009G198500 Sobic004G130900--Sobic009G198500 Sobic004G130900--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic004G130900--Sobic007G168600 Sobic007G132700--Sobic009G179200 Sobic009G104000 Sobic009G104000 Sobic007G132700--Sobic009G104000 Sobic001G162100 Sobic001G162100 Sobic007G132700--Sobic001G162100 Sobic007G132700--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic007G132700--Sobic010G188100 Sobic004G253900 Sobic004G253900 Sobic007G132700--Sobic004G253900 Sobic008G016900 Sobic008G016900 Sobic007G132700--Sobic008G016900 Sobic001G012800 Sobic001G012800 Sobic007G132700--Sobic001G012800 Sobic009G219900 Sobic009G219900 Sobic007G132700--Sobic009G219900 Sobic001G078800--Sobic003G261400 Sobic010G205300 Sobic010G205300 Sobic001G078800--Sobic010G205300 Sobic010G057900 Sobic010G057900 Sobic001G078800--Sobic010G057900 Sobic001G078800--Sobic002G400000 Sobic001G085100 Sobic001G085100 Sobic001G078800--Sobic001G085100 Sobic001G078800--Sobic007G168600 Sobic001G206900 Sobic001G206900 Sobic001G078800--Sobic001G206900 Sobic001G078800--Sobic001G051200 Sobic003G077900 Sobic003G077900 Sobic001G078800--Sobic003G077900 Sobic010G062800--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic010G062800--Sobic007G188100 Sobic010G062800--Sobic001G403700 Sobic006G192500 Sobic006G192500 Sobic010G062800--Sobic006G192500 Sobic010G228000 Sobic010G228000 Sobic010G062800--Sobic010G228000 Sobic001G283500 Sobic001G283500 Sobic010G062800--Sobic001G283500 Sobic010G062800--Sobic002G214900 Sobic010G062800--Sobic004G145200 Sobic010G062800--Sobic006G182100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.