Gene annotation
Transcriptome id Sobic.004G132300.4,Sobic.004G132300.2,Sobic.004G132300.3,Sobic.004G132300.1
Synonym Sb04g012230
Functional annotation lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
UniProt A0A194YPC9 , A0A194YPD1 , A0A194YPG2 , A0A1Z5RN88
Pfam PF05212
Panther DB PTHR31210:SF6 PTHR31210 PTHR31210 PTHR31210:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67850 : Protein of unknown function (DUF707)
RAP-DB (Rice) LOC_Os02g19510.2,LOC_Os02g19510.1 : lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
MaizeGDB (Corn) Zm00025a019766 , Zm00025a031438 , Zm00025a026338
Brachypodium KQK11737 , KQK11738
Barley HORVU3Hr1G114290.2 , HORVU3Hr1G114290.1 , HORVU0Hr1G031960.1 , HORVU3Hr1G092590.1 , HORVU0Hr1G031960.3 , HORVU0Hr1G031960.2
Wheat TraesCS3D02G530200 , TraesCS3A02G416100 , TraesCS3A02G416100 , TraesCS3D02G411800 , TraesCS3D02G411800 , TraesCS3B02G592300 , TraesCS3A02G525000 , TraesCS3A02G416100 , TraesCS3B02G451200 , TraesCS3B02G451200
Populus PNT14748 , PNT14744 , PNT14745 , PNT14746 , PNT14747 , PNT14750


JBrowse

Open New Page


cDNA sequences
Sobic.004G132300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
2 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
3 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
4 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
5 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.001G237500 transporter family protein, putative, expressed -
7 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
8 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
9 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
10 Sobic.001G049200 AMP-binding enzyme, putative, expressed -
11 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
12 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
13 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
14 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
15 Sobic.003G261400 DUF292 domain containing protein, expressed -
16 Sobic.001G022800 actin, putative, expressed K10355: actin, other eukaryote
17 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
18 Sobic.006G232000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
19 Sobic.008G088830 - -
20 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G132300 Sobic004G132300 Sobic001G283200 Sobic001G283200 Sobic004G132300--Sobic001G283200 Sobic001G033500 Sobic001G033500 Sobic004G132300--Sobic001G033500 Sobic006G217700 Sobic006G217700 Sobic004G132300--Sobic006G217700 Sobic001G206900 Sobic001G206900 Sobic004G132300--Sobic001G206900 Sobic006G148200 Sobic006G148200 Sobic004G132300--Sobic006G148200 Sobic001G237500 Sobic001G237500 Sobic004G132300--Sobic001G237500 Sobic002G294200 Sobic002G294200 Sobic004G132300--Sobic002G294200 Sobic004G274400 Sobic004G274400 Sobic004G132300--Sobic004G274400 Sobic006G034000 Sobic006G034000 Sobic004G132300--Sobic006G034000 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic001G033500--Sobic001G283200 Sobic007G184500 Sobic007G184500 Sobic001G033500--Sobic007G184500 Sobic001G033500--Sobic006G148200 Sobic007G118000 Sobic007G118000 Sobic001G033500--Sobic007G118000 Sobic001G085100 Sobic001G085100 Sobic001G033500--Sobic001G085100 Sobic010G073100 Sobic010G073100 Sobic001G033500--Sobic010G073100 Sobic001G033500--Sobic001G458700 Sobic002G113800 Sobic002G113800 Sobic001G033500--Sobic002G113800 Sobic003G012200 Sobic003G012200 Sobic001G033500--Sobic003G012200 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic001G206900--Sobic001G323000 Sobic003G312200 Sobic003G312200 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic001G206900--Sobic004G181900 Sobic001G206900--Sobic001G085100 Sobic009G149500 Sobic009G149500 Sobic001G206900--Sobic009G149500 Sobic001G206900--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G206900--Sobic007G167900 Sobic001G206900--Sobic003G349300 Sobic006G148200--Sobic004G274400 Sobic006G148200--Sobic001G085100 Sobic006G148200--Sobic006G034000 Sobic006G148200--Sobic001G323000 Sobic009G228700 Sobic009G228700 Sobic006G148200--Sobic009G228700 Sobic006G148200--Sobic001G033500 Sobic006G148200--Sobic001G206900 Sobic010G000900 Sobic010G000900 Sobic006G148200--Sobic010G000900 Sobic001G048700 Sobic001G048700 Sobic006G148200--Sobic001G048700 Sobic010G105600 Sobic010G105600 Sobic001G237500--Sobic010G105600 Sobic006G257001 Sobic006G257001 Sobic001G237500--Sobic006G257001 Sobic001G105100 Sobic001G105100 Sobic001G237500--Sobic001G105100 Sobic001G067900 Sobic001G067900 Sobic001G237500--Sobic001G067900 Sobic003G217100 Sobic003G217100 Sobic001G237500--Sobic003G217100 Sobic004G222600 Sobic004G222600 Sobic001G237500--Sobic004G222600 Sobic002G131900 Sobic002G131900 Sobic001G237500--Sobic002G131900 Sobic003G052400 Sobic003G052400 Sobic001G237500--Sobic003G052400 Sobic001G237500--Sobic004G132300 Sobic002G242500 Sobic002G242500 Sobic002G294200--Sobic002G242500 Sobic002G294200--Sobic004G274400 Sobic009G179200 Sobic009G179200 Sobic002G294200--Sobic009G179200 Sobic002G294200--Sobic001G283200 Sobic006G176600 Sobic006G176600 Sobic002G294200--Sobic006G176600 Sobic002G294200--Sobic006G148200 Sobic010G193900 Sobic010G193900 Sobic002G294200--Sobic010G193900 Sobic006G281800 Sobic006G281800 Sobic002G294200--Sobic006G281800 Sobic010G064600 Sobic010G064600 Sobic002G294200--Sobic010G064600 Sobic004G274400--Sobic006G148200 Sobic004G274400--Sobic001G323000 Sobic006G225600 Sobic006G225600 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic004G274400--Sobic002G131900 Sobic004G274400--Sobic003G312200 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic006G034000--Sobic009G228700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.