Gene annotation
Transcriptome id Sobic.002G294200.1
Synonym Sb02g032530
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt C5X7T3
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF37
NCBI CDD -
KEGG Orthology K17086; transmembrane 9 superfamily member 2/4
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G25100 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os09g38530.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a005641 , Zm00025a014550 , Zm00025a005645 , Zm00025a047903 , Zm00025a031240
Brachypodium PNT67012 , KQJ91436
Barley HORVU5Hr1G088680.11 , HORVU5Hr1G088680.1 , HORVU5Hr1G088680.3 , HORVU5Hr1G088680.13 , HORVU5Hr1G088680.12 , HORVU5Hr1G088680.15 , HORVU5Hr1G088680.14 , HORVU5Hr1G088680.17 , HORVU5Hr1G088680.16 , HORVU5Hr1G088680.9 , HORVU5Hr1G088680.8 , HORVU5Hr1G088680.5 , HORVU5Hr1G088680.4 , HORVU5Hr1G088680.7 , HORVU5Hr1G088680.6 , HORVU5Hr1G088680.2 , HORVU5Hr1G088680.10
Wheat TraesCS5A02G359800 , TraesCS5A02G359800 , TraesCS5D02G369000 , TraesCS5B02G362100 , TraesCS5B02G362100
Populus PNT43532 , PNT43531


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cDNA sequences
Sobic.002G294200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
2 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
3 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
4 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
5 Sobic.006G176600 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
6 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
7 Sobic.010G193900 N-terminal asparagine amidohydrolase, putative, expressed K14662: protein N-terminal asparagine amidohydrolase
8 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
9 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
10 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
11 Sobic.006G232000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.001G049200 AMP-binding enzyme, putative, expressed -
13 Sobic.004G132300 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
14 Sobic.003G261400 DUF292 domain containing protein, expressed -
15 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
16 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
17 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
18 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
19 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
20 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic002G294200 Sobic002G294200 Sobic002G242500 Sobic002G242500 Sobic002G294200--Sobic002G242500 Sobic004G274400 Sobic004G274400 Sobic002G294200--Sobic004G274400 Sobic009G179200 Sobic009G179200 Sobic002G294200--Sobic009G179200 Sobic001G283200 Sobic001G283200 Sobic002G294200--Sobic001G283200 Sobic006G176600 Sobic006G176600 Sobic002G294200--Sobic006G176600 Sobic006G148200 Sobic006G148200 Sobic002G294200--Sobic006G148200 Sobic010G193900 Sobic010G193900 Sobic002G294200--Sobic010G193900 Sobic006G281800 Sobic006G281800 Sobic002G294200--Sobic006G281800 Sobic010G064600 Sobic010G064600 Sobic002G294200--Sobic010G064600 Sobic002G242500--Sobic002G294200 Sobic007G098400 Sobic007G098400 Sobic002G242500--Sobic007G098400 Sobic004G145200 Sobic004G145200 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic001G049200 Sobic001G049200 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic002G242500--Sobic007G221100 Sobic001G403700 Sobic001G403700 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic004G274400--Sobic006G148200 Sobic001G323000 Sobic001G323000 Sobic004G274400--Sobic001G323000 Sobic006G225600 Sobic006G225600 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic002G131900 Sobic002G131900 Sobic004G274400--Sobic002G131900 Sobic003G312200 Sobic003G312200 Sobic004G274400--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic009G179200--Sobic001G049200 Sobic009G179200--Sobic002G294200 Sobic009G179200--Sobic001G403700 Sobic003G261400 Sobic003G261400 Sobic009G179200--Sobic003G261400 Sobic009G179200--Sobic002G242500 Sobic004G130900 Sobic004G130900 Sobic009G179200--Sobic004G130900 Sobic007G132700 Sobic007G132700 Sobic009G179200--Sobic007G132700 Sobic001G078800 Sobic001G078800 Sobic009G179200--Sobic001G078800 Sobic010G062800 Sobic010G062800 Sobic009G179200--Sobic010G062800 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic004G082900 Sobic004G082900 Sobic001G283200--Sobic004G082900 Sobic006G176600--Sobic002G294200 Sobic006G176600--Sobic010G193900 Sobic010G002400 Sobic010G002400 Sobic006G176600--Sobic010G002400 Sobic006G176600--Sobic006G148200 Sobic006G176600--Sobic001G049200 Sobic006G222100 Sobic006G222100 Sobic006G176600--Sobic006G222100 Sobic004G237600 Sobic004G237600 Sobic006G176600--Sobic004G237600 Sobic007G136100 Sobic007G136100 Sobic006G176600--Sobic007G136100 Sobic003G012200 Sobic003G012200 Sobic006G176600--Sobic003G012200 Sobic006G148200--Sobic004G274400 Sobic001G085100 Sobic001G085100 Sobic006G148200--Sobic001G085100 Sobic006G034000 Sobic006G034000 Sobic006G148200--Sobic006G034000 Sobic006G148200--Sobic001G323000 Sobic009G228700 Sobic009G228700 Sobic006G148200--Sobic009G228700 Sobic006G148200--Sobic001G033500 Sobic006G148200--Sobic001G206900 Sobic010G000900 Sobic010G000900 Sobic006G148200--Sobic010G000900 Sobic001G048700 Sobic001G048700 Sobic006G148200--Sobic001G048700 Sobic010G193900--Sobic007G136100 Sobic010G193900--Sobic010G002400 Sobic010G193900--Sobic006G176600 Sobic010G193900--Sobic002G294200 Sobic004G173600 Sobic004G173600 Sobic010G193900--Sobic004G173600 Sobic002G114800 Sobic002G114800 Sobic010G193900--Sobic002G114800 Sobic004G081800 Sobic004G081800 Sobic010G193900--Sobic004G081800 Sobic010G193900--Sobic001G283200 Sobic010G193900--Sobic001G049200 Sobic009G225000 Sobic009G225000 Sobic006G281800--Sobic009G225000 Sobic006G281800--Sobic003G349300 Sobic006G281800--Sobic001G283200 Sobic006G281800--Sobic004G181900 Sobic006G281800--Sobic001G206900 Sobic002G385900 Sobic002G385900 Sobic006G281800--Sobic002G385900 Sobic004G206700 Sobic004G206700 Sobic006G281800--Sobic004G206700 Sobic006G281800--Sobic010G064600 Sobic006G281800--Sobic003G312200 Sobic003G087000 Sobic003G087000 Sobic010G064600--Sobic003G087000 Sobic008G093000 Sobic008G093000 Sobic010G064600--Sobic008G093000 Sobic010G261600 Sobic010G261600 Sobic010G064600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000
Octagon: transcription factors


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