Gene annotation
Transcriptome id Sobic.002G113800.2,Sobic.002G113800.1
Synonym Sb02g009730, SPDS1
Functional annotation spermidine synthase, putative, expressed
UniProt A0A1B6QAK5 , A0A1B6QAL0
Pfam PF01564
Panther DB PTHR11558 PTHR11558:SF25
NCBI CDD KOG1562; Spermidine synthase
KEGG Orthology K00797; speE, SRM, spermidine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G23820 : spermidine synthase 1
RAP-DB (Rice) LOC_Os07g22600.1 : spermidine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a013325 , Zm00025a045716
Brachypodium KQK20119
Barley HORVU7Hr1G055560.1 , HORVU7Hr1G055560.2
Wheat TraesCS7D02G266000 , TraesCS7B02G163500 , TraesCS7A02G265300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G113800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073100 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
2 Sobic.003G259700 transmembrane protein 93, putative, expressed -
3 Sobic.001G033500 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00729: dolichyl-phosphate beta-glucosyltransferase
4 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
5 Sobic.010G046300 rRNA-processing protein FCF, putative, expressed K14566: UTP24, U3 small nucleolar RNA-associated protein 24
6 Sobic.010G151000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
7 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
8 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
9 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
10 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
11 Sobic.001G058100 thioredoxin, putative, expressed -
12 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
13 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
14 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
15 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
16 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
17 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
18 Sobic.006G232000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
19 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
20 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -


Gene co-expression network
sample Sobic002G113800 Sobic002G113800 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic003G259700 Sobic003G259700 Sobic002G113800--Sobic003G259700 Sobic001G033500 Sobic001G033500 Sobic002G113800--Sobic001G033500 Sobic001G010400 Sobic001G010400 Sobic002G113800--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic006G114400 Sobic006G114400 Sobic002G113800--Sobic006G114400 Sobic007G142500 Sobic007G142500 Sobic002G113800--Sobic007G142500 Sobic006G217700 Sobic006G217700 Sobic002G113800--Sobic006G217700 Sobic010G073100--Sobic002G113800 Sobic008G145100 Sobic008G145100 Sobic010G073100--Sobic008G145100 Sobic007G184500 Sobic007G184500 Sobic010G073100--Sobic007G184500 Sobic010G073100--Sobic001G033500 Sobic006G203100 Sobic006G203100 Sobic010G073100--Sobic006G203100 Sobic004G010900 Sobic004G010900 Sobic010G073100--Sobic004G010900 Sobic002G281300 Sobic002G281300 Sobic010G073100--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic010G073100--Sobic006G044600 Sobic001G010700 Sobic001G010700 Sobic010G073100--Sobic001G010700 Sobic003G259700--Sobic002G113800 Sobic003G259700--Sobic001G010400 Sobic003G259700--Sobic010G046300 Sobic001G481700 Sobic001G481700 Sobic003G259700--Sobic001G481700 Sobic003G047100 Sobic003G047100 Sobic003G259700--Sobic003G047100 Sobic010G044200 Sobic010G044200 Sobic003G259700--Sobic010G044200 Sobic003G259700--Sobic007G142500 Sobic004G224900 Sobic004G224900 Sobic003G259700--Sobic004G224900 Sobic003G259700--Sobic006G114400 Sobic001G283200 Sobic001G283200 Sobic001G033500--Sobic001G283200 Sobic001G033500--Sobic007G184500 Sobic006G148200 Sobic006G148200 Sobic001G033500--Sobic006G148200 Sobic007G118000 Sobic007G118000 Sobic001G033500--Sobic007G118000 Sobic001G085100 Sobic001G085100 Sobic001G033500--Sobic001G085100 Sobic001G033500--Sobic010G073100 Sobic001G458700 Sobic001G458700 Sobic001G033500--Sobic001G458700 Sobic001G033500--Sobic002G113800 Sobic003G012200 Sobic003G012200 Sobic001G033500--Sobic003G012200 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic010G046300--Sobic001G481700 Sobic010G046300--Sobic010G151000 Sobic008G073300 Sobic008G073300 Sobic010G046300--Sobic008G073300 Sobic010G046300--Sobic002G113800 Sobic007G045600 Sobic007G045600 Sobic010G046300--Sobic007G045600 Sobic005G003800 Sobic005G003800 Sobic010G046300--Sobic005G003800 Sobic010G046300--Sobic007G118000 Sobic006G220700 Sobic006G220700 Sobic010G046300--Sobic006G220700 Sobic010G046300--Sobic004G224900 Sobic010G151000--Sobic010G046300 Sobic010G151000--Sobic002G113800 Sobic010G151000--Sobic007G142500 Sobic010G151000--Sobic007G118000 Sobic010G151000--Sobic001G033500 Sobic010G151000--Sobic010G073100 Sobic010G151000--Sobic001G458700 Sobic010G151000--Sobic002G281300 Sobic010G151000--Sobic006G044600 Sobic009G139800 Sobic009G139800 Sobic006G114400--Sobic009G139800 Sobic003G009300 Sobic003G009300 Sobic006G114400--Sobic003G009300 Sobic003G087000 Sobic003G087000 Sobic006G114400--Sobic003G087000 Sobic006G114400--Sobic002G113800 Sobic004G335000 Sobic004G335000 Sobic006G114400--Sobic004G335000 Sobic002G141700 Sobic002G141700 Sobic006G114400--Sobic002G141700 Sobic006G114400--Sobic007G142500 Sobic004G194900 Sobic004G194900 Sobic006G114400--Sobic004G194900 Sobic009G225000 Sobic009G225000 Sobic006G114400--Sobic009G225000 Sobic007G142500--Sobic007G045600 Sobic007G142500--Sobic001G458700 Sobic001G461900 Sobic001G461900 Sobic007G142500--Sobic001G461900 Sobic003G261400 Sobic003G261400 Sobic007G142500--Sobic003G261400 Sobic003G323600 Sobic003G323600 Sobic007G142500--Sobic003G323600 Sobic007G176200 Sobic007G176200 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic007G142500--Sobic004G335000 Sobic007G142500--Sobic002G281300 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic006G217700--Sobic001G033500 Sobic006G217700--Sobic007G148800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.