Gene annotation
Transcriptome id Sobic.010G016400.1
Synonym PEX11C, Sb10g001610
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
peroxisomal biogenesis factor 11, putative, expressed
UniProt C5Z2X5
Pfam PF05648
Panther DB PTHR12652 PTHR12652:SF16
NCBI CDD KOG4186; Peroxisomal biogenesis protein (peroxin)
KEGG Orthology -
Gene Ontology GO:0016559; peroxisome fission GO:0005779integral component of peroxisomal membrane


Orthologs (automatic annotation)
TAIR AT1G01820 : peroxin 11c
RAP-DB (Rice) LOC_Os06g03660.1 : peroxisomal biogenesis factor 11, putative, expressed
MaizeGDB (Corn) Zm00025a041339
Brachypodium PNT76562 , KQK19643 , KQK19642 , KQK19644
Barley HORVU7Hr1G010250.5 , HORVU7Hr1G010250.4 , HORVU4Hr1G085960.8 , HORVU7Hr1G010250.6 , HORVU7Hr1G010250.1 , HORVU7Hr1G010250.3 , HORVU7Hr1G010250.2 , HORVU4Hr1G085960.2 , HORVU4Hr1G085960.3 , HORVU4Hr1G085960.1 , HORVU4Hr1G085960.7 , HORVU4Hr1G085960.4 , HORVU4Hr1G085960.5 , HORVU4Hr1G085960.9
Wheat TraesCS4A02G442900 , TraesCS4A02G442900 , TraesCS4B02G355100 , TraesCS5A02G524400 , TraesCS4D02G348600
Populus -


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cDNA sequences
Sobic.010G016400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
2 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
3 Sobic.004G347300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
4 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
5 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
6 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
7 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
8 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
9 Sobic.009G172500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
10 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
11 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
13 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
14 Sobic.006G232000 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.004G185900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
16 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
17 Sobic.003G087000 expressed protein -
18 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
19 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.006G114800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A


Gene co-expression network
sample Sobic010G016400 Sobic010G016400 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic001G132000 Sobic001G132000 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic001G386400 Sobic001G386400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic004G347300--Sobic010G016400 Sobic004G347300--Sobic005G139400 Sobic001G023200 Sobic001G023200 Sobic004G347300--Sobic001G023200 Sobic004G347300--Sobic006G119200 Sobic004G347300--Sobic007G148800 Sobic004G347300--Sobic001G132000 Sobic004G347300--Sobic001G010400 Sobic009G004200 Sobic009G004200 Sobic004G347300--Sobic009G004200 Sobic004G012400 Sobic004G012400 Sobic004G347300--Sobic004G012400 Sobic006G119200--Sobic001G386400 Sobic006G119200--Sobic001G132000 Sobic006G119200--Sobic010G016400 Sobic006G119200--Sobic009G167700 Sobic002G155400 Sobic002G155400 Sobic006G119200--Sobic002G155400 Sobic009G234800 Sobic009G234800 Sobic006G119200--Sobic009G234800 Sobic001G512800 Sobic001G512800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic006G119200--Sobic004G347300 Sobic007G148800--Sobic001G010400 Sobic007G148800--Sobic010G016400 Sobic007G148800--Sobic006G217700 Sobic007G148800--Sobic004G185900 Sobic007G148700 Sobic007G148700 Sobic007G148800--Sobic007G148700 Sobic007G148800--Sobic005G139400 Sobic006G140000 Sobic006G140000 Sobic007G148800--Sobic006G140000 Sobic007G148800--Sobic004G347300 Sobic007G148800--Sobic002G113800 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic006G217700--Sobic007G148800 Sobic002G249000 Sobic002G249000 Sobic001G010400--Sobic002G249000 Sobic001G010400--Sobic007G148800 Sobic001G010400--Sobic004G185900 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic003G338400 Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic006G096400 Sobic006G096400 Sobic009G172500--Sobic006G096400 Sobic009G172500--Sobic010G016400 Sobic010G206000 Sobic010G206000 Sobic009G172500--Sobic010G206000 Sobic002G322900 Sobic002G322900 Sobic009G172500--Sobic002G322900 Sobic002G381300 Sobic002G381300 Sobic009G172500--Sobic002G381300 Sobic009G016800 Sobic009G016800 Sobic009G172500--Sobic009G016800 Sobic009G172500--Sobic005G139400 Sobic002G024100 Sobic002G024100 Sobic009G172500--Sobic002G024100 Sobic009G161401 Sobic009G161401 Sobic009G172500--Sobic009G161401
Octagon: transcription factors


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