Gene annotation
Transcriptome id Sobic.009G167700.1
Synonym Sb09g022940
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
NLI interacting factor-like phosphatase, putative, expressed
UniProt C5YZD3
Pfam PF03031
Panther DB PTHR12210 PTHR12210:SF72
NCBI CDD KOG1605; TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)
KEGG Orthology K15731; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55960 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os01g61640.1 : NLI interacting factor-like phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a026991 , Zm00025a039719
Brachypodium -
Barley -
Wheat TraesCS1A02G292000 , TraesCS1A02G292000 , TraesCS1D02G290500 , TraesCS1B02G301400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G167700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G244100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
3 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
4 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
5 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
6 Sobic.001G089800 nuclear prelamin A recognition factor, putative, expressed -
7 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.001G132000 fumarylacetoacetase, putative, expressed K01557: acylpyruvate hydrolase
9 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
10 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
11 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
12 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
13 Sobic.009G193700 transmembrane protein 56, putative, expressed -
14 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
15 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
16 Sobic.004G225100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K01501: nitrilase
17 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
18 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
19 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)


Gene co-expression network
sample Sobic009G167700 Sobic009G167700 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic004G102400 Sobic004G102400 Sobic009G167700--Sobic004G102400 Sobic001G386400 Sobic001G386400 Sobic009G167700--Sobic001G386400 Sobic010G016400 Sobic010G016400 Sobic009G167700--Sobic010G016400 Sobic001G089800 Sobic001G089800 Sobic009G167700--Sobic001G089800 Sobic003G354400 Sobic003G354400 Sobic009G167700--Sobic003G354400 Sobic001G132000 Sobic001G132000 Sobic009G167700--Sobic001G132000 Sobic006G119200 Sobic006G119200 Sobic009G167700--Sobic006G119200 Sobic002G244100--Sobic009G167700 Sobic002G244100--Sobic001G089800 Sobic008G093000 Sobic008G093000 Sobic002G244100--Sobic008G093000 Sobic004G225100 Sobic004G225100 Sobic002G244100--Sobic004G225100 Sobic002G244100--Sobic003G354400 Sobic010G064600 Sobic010G064600 Sobic002G244100--Sobic010G064600 Sobic004G167400 Sobic004G167400 Sobic002G244100--Sobic004G167400 Sobic001G334600 Sobic001G334600 Sobic002G244100--Sobic001G334600 Sobic009G126900 Sobic009G126900 Sobic002G244100--Sobic009G126900 Sobic004G341200--Sobic001G089800 Sobic002G322900 Sobic002G322900 Sobic004G341200--Sobic002G322900 Sobic004G341200--Sobic009G167700 Sobic001G512800 Sobic001G512800 Sobic004G341200--Sobic001G512800 Sobic009G193700 Sobic009G193700 Sobic004G341200--Sobic009G193700 Sobic001G488500 Sobic001G488500 Sobic004G341200--Sobic001G488500 Sobic001G003000 Sobic001G003000 Sobic004G341200--Sobic001G003000 Sobic004G236600 Sobic004G236600 Sobic004G341200--Sobic004G236600 Sobic003G338400 Sobic003G338400 Sobic004G341200--Sobic003G338400 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic009G000200 Sobic009G000200 Sobic001G386400--Sobic009G000200 Sobic003G316300 Sobic003G316300 Sobic001G386400--Sobic003G316300 Sobic002G155400 Sobic002G155400 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic002G024100 Sobic002G024100 Sobic001G386400--Sobic002G024100 Sobic001G386400--Sobic004G341200 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic001G089800--Sobic001G003000 Sobic001G089800--Sobic004G341200 Sobic001G089800--Sobic009G193700 Sobic001G089800--Sobic006G271200 Sobic001G089800--Sobic009G167700 Sobic001G089800--Sobic002G244100 Sobic001G089800--Sobic004G102400 Sobic001G089800--Sobic010G064600 Sobic001G089800--Sobic003G354400 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic001G132000--Sobic006G119200 Sobic001G132000--Sobic009G167700 Sobic010G210200 Sobic010G210200 Sobic001G132000--Sobic010G210200 Sobic005G024900 Sobic005G024900 Sobic001G132000--Sobic005G024900 Sobic004G101900 Sobic004G101900 Sobic001G132000--Sobic004G101900 Sobic003G061400 Sobic003G061400 Sobic001G132000--Sobic003G061400 Sobic007G219900 Sobic007G219900 Sobic001G132000--Sobic007G219900 Sobic005G079900 Sobic005G079900 Sobic001G132000--Sobic005G079900 Sobic002G304000 Sobic002G304000 Sobic001G132000--Sobic002G304000 Sobic006G119200--Sobic001G386400 Sobic006G119200--Sobic001G132000 Sobic006G119200--Sobic010G016400 Sobic006G119200--Sobic009G167700 Sobic006G119200--Sobic002G155400 Sobic009G234800 Sobic009G234800 Sobic006G119200--Sobic009G234800 Sobic006G119200--Sobic001G512800 Sobic005G231900 Sobic005G231900 Sobic006G119200--Sobic005G231900 Sobic006G119200--Sobic004G347300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.