Gene annotation
Transcriptome id Sobic.004G185900.2
Synonym Sb04g023470
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
galactosyltransferase, putative, expressed
UniProt A0A1Z5RN66
Pfam PF13334 PF01762
Panther DB PTHR11214 PTHR11214:SF74
NCBI CDD KOG2288; Galactosyltransferases
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0008378galactosyltransferase activity GO:0006486protein glycosylation


Orthologs (automatic annotation)
TAIR AT1G77810 : Galactosyltransferase family protein
RAP-DB (Rice) LOC_Os02g35870.2 : galactosyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a020754 , Zm00025a031675
Brachypodium KQJ99972 , KQJ99973 , KQJ90484
Barley HORVU5Hr1G067750.27 , HORVU5Hr1G067750.26 , HORVU5Hr1G067750.25 , HORVU5Hr1G067750.24 , HORVU5Hr1G067750.23 , HORVU5Hr1G067750.22 , HORVU5Hr1G067750.21 , HORVU5Hr1G067750.20 , HORVU5Hr1G067750.29 , HORVU5Hr1G067750.8 , HORVU5Hr1G067750.9 , HORVU5Hr1G067750.4 , HORVU5Hr1G067750.5 , HORVU5Hr1G067750.6 , HORVU5Hr1G067750.7 , HORVU5Hr1G067750.1 , HORVU5Hr1G067750.2 , HORVU5Hr1G067750.3 , HORVU6Hr1G052140.12 , HORVU6Hr1G052140.10 , HORVU6Hr1G052140.11 , HORVU5Hr1G067750.18 , HORVU5Hr1G067750.19 , HORVU5Hr1G067750.16 , HORVU5Hr1G067750.17 , HORVU5Hr1G067750.14 , HORVU5Hr1G067750.15 , HORVU5Hr1G067750.12 , HORVU5Hr1G067750.13 , HORVU5Hr1G067750.10 , HORVU5Hr1G067750.11 , HORVU6Hr1G052140.8 , HORVU6Hr1G052140.9 , HORVU6Hr1G052140.6 , HORVU6Hr1G052140.7 , HORVU6Hr1G052140.4 , HORVU6Hr1G052140.5 , HORVU6Hr1G052140.2 , HORVU6Hr1G052140.3 , HORVU6Hr1G052140.1
Wheat TraesCS5B02G233700 , TraesCS5A02G235300 , TraesCS5A02G235300 , TraesCS5A02G235300 , TraesCS5A02G235300 , TraesCS6D02G187900 , TraesCS6D02G187900 , TraesCS5D02G242400 , TraesCS5D02G242400 , TraesCS6A02G201400 , TraesCS6A02G201400 , TraesCS6B02G227300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G185900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
2 Sobic.007G148800 cupin superfamily protein, putative, expressed K09705: uncharacterized protein
3 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
4 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
5 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
6 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
7 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
8 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
9 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
10 Sobic.002G381300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
11 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
12 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
13 Sobic.009G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
14 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
15 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
16 Sobic.001G026900 cytidine deaminase, putative, expressed -
17 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -
18 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
19 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.009G003900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07874: Ras-related protein Rab-1A


Gene co-expression network
sample Sobic004G185900 Sobic004G185900 Sobic001G010400 Sobic001G010400 Sobic004G185900--Sobic001G010400 Sobic007G148800 Sobic007G148800 Sobic004G185900--Sobic007G148800 Sobic006G140000 Sobic006G140000 Sobic004G185900--Sobic006G140000 Sobic004G054300 Sobic004G054300 Sobic004G185900--Sobic004G054300 Sobic010G016400 Sobic010G016400 Sobic004G185900--Sobic010G016400 Sobic002G249000 Sobic002G249000 Sobic004G185900--Sobic002G249000 Sobic002G113800 Sobic002G113800 Sobic004G185900--Sobic002G113800 Sobic005G139400 Sobic005G139400 Sobic004G185900--Sobic005G139400 Sobic010G176700 Sobic010G176700 Sobic004G185900--Sobic010G176700 Sobic001G010400--Sobic002G249000 Sobic001G010400--Sobic007G148800 Sobic001G010400--Sobic004G185900 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic002G180600 Sobic002G180600 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic001G010400--Sobic010G016400 Sobic007G148800--Sobic001G010400 Sobic007G148800--Sobic010G016400 Sobic006G217700 Sobic006G217700 Sobic007G148800--Sobic006G217700 Sobic007G148800--Sobic004G185900 Sobic007G148700 Sobic007G148700 Sobic007G148800--Sobic007G148700 Sobic007G148800--Sobic005G139400 Sobic007G148800--Sobic006G140000 Sobic004G347300 Sobic004G347300 Sobic007G148800--Sobic004G347300 Sobic007G148800--Sobic002G113800 Sobic001G488500 Sobic001G488500 Sobic006G140000--Sobic001G488500 Sobic003G348400 Sobic003G348400 Sobic006G140000--Sobic003G348400 Sobic006G140000--Sobic004G185900 Sobic003G338400 Sobic003G338400 Sobic006G140000--Sobic003G338400 Sobic001G151800 Sobic001G151800 Sobic006G140000--Sobic001G151800 Sobic005G215900 Sobic005G215900 Sobic006G140000--Sobic005G215900 Sobic003G085300 Sobic003G085300 Sobic006G140000--Sobic003G085300 Sobic006G140000--Sobic010G016400 Sobic004G102400 Sobic004G102400 Sobic006G140000--Sobic004G102400 Sobic004G054300--Sobic006G217700 Sobic006G264300 Sobic006G264300 Sobic004G054300--Sobic006G264300 Sobic003G023500 Sobic003G023500 Sobic004G054300--Sobic003G023500 Sobic001G089500 Sobic001G089500 Sobic004G054300--Sobic001G089500 Sobic004G054300--Sobic004G185900 Sobic002G296300 Sobic002G296300 Sobic004G054300--Sobic002G296300 Sobic002G083266 Sobic002G083266 Sobic004G054300--Sobic002G083266 Sobic004G054300--Sobic002G113800 Sobic002G309400 Sobic002G309400 Sobic004G054300--Sobic002G309400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic010G016400--Sobic007G148800 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic002G249000--Sobic001G010400 Sobic004G050000 Sobic004G050000 Sobic002G249000--Sobic004G050000 Sobic009G003900 Sobic009G003900 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic005G117400 Sobic005G117400 Sobic002G249000--Sobic005G117400 Sobic002G249000--Sobic010G176700 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic010G073100 Sobic010G073100 Sobic002G113800--Sobic010G073100 Sobic003G259700 Sobic003G259700 Sobic002G113800--Sobic003G259700 Sobic001G033500 Sobic001G033500 Sobic002G113800--Sobic001G033500 Sobic002G113800--Sobic001G010400 Sobic010G046300 Sobic010G046300 Sobic002G113800--Sobic010G046300 Sobic010G151000 Sobic010G151000 Sobic002G113800--Sobic010G151000 Sobic006G114400 Sobic006G114400 Sobic002G113800--Sobic006G114400 Sobic007G142500 Sobic007G142500 Sobic002G113800--Sobic007G142500 Sobic002G113800--Sobic006G217700 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic005G139400--Sobic002G113800 Sobic001G132000 Sobic001G132000 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic005G139400--Sobic004G185900 Sobic003G061400 Sobic003G061400 Sobic010G176700--Sobic003G061400 Sobic010G176700--Sobic002G249000 Sobic010G176700--Sobic009G003900 Sobic001G184000 Sobic001G184000 Sobic010G176700--Sobic001G184000 Sobic002G057300 Sobic002G057300 Sobic010G176700--Sobic002G057300 Sobic003G442500 Sobic003G442500 Sobic010G176700--Sobic003G442500 Sobic010G176700--Sobic004G185900 Sobic010G176700--Sobic001G010400 Sobic010G176700--Sobic004G277000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.