Gene annotation
Transcriptome id Sobic.005G121500.1
Synonym Sb05g017960, HSD1, ATHSD1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
dehydrogenase/reductase, putative, expressed
UniProt C5Y2N4
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF423
NCBI CDD KOG1205; Predicted dehydrogenase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50600 : hydroxysteroid dehydrogenase 1
RAP-DB (Rice) LOC_Os11g30560.1 : dehydrogenase/reductase, putative, expressed
MaizeGDB (Corn) Zm00025a015653 , Zm00025a029713
Brachypodium -
Barley HORVU5Hr1G013510.10 , HORVU5Hr1G013510.8 , HORVU5Hr1G013510.7 , HORVU5Hr1G013510.6 , HORVU5Hr1G013510.1 , HORVU5Hr1G013510.3 , HORVU5Hr1G013510.2
Wheat TraesCS5A02G054900 , TraesCS5B02G061600 , TraesCS5D02G066100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G176200 - -
2 Sobic.007G123200 heavy metal-associated domain containing protein, expressed -
3 Sobic.001G358900 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.008G130700 expressed protein -
5 Sobic.005G203600 - -
6 Sobic.007G090415 - -
7 Sobic.001G275800 peptide transporter PTR2, putative, expressed -
8 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
9 Sobic.005G020200 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.007G151200 Cupin domain containing protein, expressed -
11 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G001200 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
14 Sobic.009G102800 MRH1, putative, expressed -
15 Sobic.006G001400 Leucine Rich Repeat family protein, expressed -
16 Sobic.003G157500 oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
17 Sobic.006G025700 - -
18 Sobic.004G151900 - -
19 Sobic.001G142400 RIO1 family protein, expressed -
20 Sobic.006G237600 expressed protein -


Gene co-expression network
sample Sobic005G121500 Sobic005G121500 Sobic003G176200 Sobic003G176200 Sobic005G121500--Sobic003G176200 Sobic007G123200 Sobic007G123200 Sobic005G121500--Sobic007G123200 Sobic001G358900 Sobic001G358900 Sobic005G121500--Sobic001G358900 Sobic008G130700 Sobic008G130700 Sobic005G121500--Sobic008G130700 Sobic005G203600 Sobic005G203600 Sobic005G121500--Sobic005G203600 Sobic007G090415 Sobic007G090415 Sobic005G121500--Sobic007G090415 Sobic001G275800 Sobic001G275800 Sobic005G121500--Sobic001G275800 Sobic003G029300 Sobic003G029300 Sobic005G121500--Sobic003G029300 Sobic005G020200 Sobic005G020200 Sobic005G121500--Sobic005G020200 Sobic003G176200--Sobic008G130700 Sobic003G176200--Sobic007G123200 Sobic003G176200--Sobic001G275800 Sobic003G176200--Sobic007G090415 Sobic003G176200--Sobic005G121500 Sobic009G102800 Sobic009G102800 Sobic003G176200--Sobic009G102800 Sobic003G176200--Sobic003G029300 Sobic008G008500 Sobic008G008500 Sobic003G176200--Sobic008G008500 Sobic004G151900 Sobic004G151900 Sobic003G176200--Sobic004G151900 Sobic007G123200--Sobic003G029300 Sobic007G123200--Sobic003G176200 Sobic007G123200--Sobic001G275800 Sobic007G123200--Sobic008G008500 Sobic007G123200--Sobic007G090415 Sobic005G227050 Sobic005G227050 Sobic007G123200--Sobic005G227050 Sobic007G123200--Sobic004G151900 Sobic007G123200--Sobic008G130700 Sobic007G123200--Sobic001G358900 Sobic001G358900--Sobic007G123200 Sobic001G358900--Sobic005G121500 Sobic007G210900 Sobic007G210900 Sobic001G358900--Sobic007G210900 Sobic001G358900--Sobic005G227050 Sobic002G300100 Sobic002G300100 Sobic001G358900--Sobic002G300100 Sobic001G358900--Sobic008G008500 Sobic006G001400 Sobic006G001400 Sobic001G358900--Sobic006G001400 Sobic006G060500 Sobic006G060500 Sobic001G358900--Sobic006G060500 Sobic009G196200 Sobic009G196200 Sobic001G358900--Sobic009G196200 Sobic008G130700--Sobic007G090415 Sobic002G190100 Sobic002G190100 Sobic008G130700--Sobic002G190100 Sobic006G025700 Sobic006G025700 Sobic008G130700--Sobic006G025700 Sobic003G157500 Sobic003G157500 Sobic008G130700--Sobic003G157500 Sobic008G130700--Sobic003G176200 Sobic008G130700--Sobic005G020200 Sobic005G141000 Sobic005G141000 Sobic008G130700--Sobic005G141000 Sobic008G130700--Sobic008G008500 Sobic001G215300 Sobic001G215300 Sobic008G130700--Sobic001G215300 Sobic005G203600--Sobic001G275800 Sobic005G203600--Sobic007G090415 Sobic005G203600--Sobic005G020200 Sobic005G203600--Sobic008G130700 Sobic005G203600--Sobic006G001400 Sobic005G203600--Sobic002G190100 Sobic001G229500 Sobic001G229500 Sobic005G203600--Sobic001G229500 Sobic005G203600--Sobic007G123200 Sobic005G203600--Sobic005G121500 Sobic007G090415--Sobic008G130700 Sobic007G090415--Sobic001G275800 Sobic007G090415--Sobic005G141000 Sobic007G090415--Sobic005G203600 Sobic007G090415--Sobic002G190100 Sobic007G090415--Sobic005G020200 Sobic007G090415--Sobic007G123200 Sobic007G090415--Sobic008G008500 Sobic007G090415--Sobic001G215300 Sobic001G275800--Sobic005G203600 Sobic001G275800--Sobic007G090415 Sobic001G275800--Sobic007G123200 Sobic001G275800--Sobic001G229500 Sobic001G275800--Sobic008G130700 Sobic001G275800--Sobic005G020200 Sobic005G218100 Sobic005G218100 Sobic001G275800--Sobic005G218100 Sobic001G275800--Sobic003G176200 Sobic001G275800--Sobic006G001400 Sobic007G154800 Sobic007G154800 Sobic003G029300--Sobic007G154800 Sobic003G029300--Sobic007G123200 Sobic003G029300--Sobic009G102800 Sobic004G240900 Sobic004G240900 Sobic003G029300--Sobic004G240900 Sobic004G193800 Sobic004G193800 Sobic003G029300--Sobic004G193800 Sobic003G029300--Sobic004G151900 Sobic006G062400 Sobic006G062400 Sobic003G029300--Sobic006G062400 Sobic004G016500 Sobic004G016500 Sobic003G029300--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G029300--Sobic001G046600 Sobic005G020200--Sobic003G157500 Sobic009G059100 Sobic009G059100 Sobic005G020200--Sobic009G059100 Sobic005G200600 Sobic005G200600 Sobic005G020200--Sobic005G200600 Sobic004G253800 Sobic004G253800 Sobic005G020200--Sobic004G253800 Sobic005G020200--Sobic006G001400 Sobic005G056201 Sobic005G056201 Sobic005G020200--Sobic005G056201 Sobic005G020200--Sobic005G141000 Sobic005G020200--Sobic006G025700 Sobic005G020200--Sobic008G130700
Octagon: transcription factors


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