Hb_003702_080

Information

Type -
Description -
Location Contig3702: 87354-88458
Sequence    

Annotation

kegg
ID rcu:RCOM_1043080
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002523447.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID A2XQE8
description Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 PE=3 SV=1
trembl
ID B9SBS8
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_1043080 PE=3 SV=1
Gene Ontology
ID GO:0008234
description kdel-tailed cysteine endopeptidase cep1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003702_080 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_152021_010 0.1519084092 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
3 Hb_004333_030 0.1557010668 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
4 Hb_000106_100 0.1648638444 - - -
5 Hb_000896_120 0.1659887867 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_001377_380 0.1690802572 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
7 Hb_000215_180 0.1730238285 - - hypothetical protein 17 [Hevea brasiliensis]
8 Hb_000635_080 0.1750182609 - - 60S ribosomal protein L17A [Hevea brasiliensis]
9 Hb_005245_070 0.178733553 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
10 Hb_004545_130 0.1788300944 - - uncharacterized protein LOC100305465 [Glycine max]
11 Hb_010883_070 0.1790040536 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
12 Hb_009838_040 0.181181342 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
13 Hb_000780_210 0.1829345478 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
14 Hb_000300_390 0.1854572584 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
15 Hb_116420_020 0.1859295707 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
16 Hb_000367_030 0.1883527835 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
17 Hb_002316_120 0.1906505641 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
18 Hb_004735_050 0.190864065 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_002843_210 0.1935175772 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
20 Hb_183086_040 0.1941481299 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]

Gene co-expression network

sample Hb_003702_080 Hb_003702_080 Hb_152021_010 Hb_152021_010 Hb_003702_080--Hb_152021_010 Hb_004333_030 Hb_004333_030 Hb_003702_080--Hb_004333_030 Hb_000106_100 Hb_000106_100 Hb_003702_080--Hb_000106_100 Hb_000896_120 Hb_000896_120 Hb_003702_080--Hb_000896_120 Hb_001377_380 Hb_001377_380 Hb_003702_080--Hb_001377_380 Hb_000215_180 Hb_000215_180 Hb_003702_080--Hb_000215_180 Hb_152021_010--Hb_000215_180 Hb_152021_010--Hb_000896_120 Hb_000922_100 Hb_000922_100 Hb_152021_010--Hb_000922_100 Hb_183086_040 Hb_183086_040 Hb_152021_010--Hb_183086_040 Hb_002014_160 Hb_002014_160 Hb_152021_010--Hb_002014_160 Hb_152021_010--Hb_001377_380 Hb_030565_040 Hb_030565_040 Hb_004333_030--Hb_030565_040 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000318_490 Hb_000318_490 Hb_004333_030--Hb_000318_490 Hb_004333_030--Hb_000896_120 Hb_187083_010 Hb_187083_010 Hb_004333_030--Hb_187083_010 Hb_004333_030--Hb_000106_100 Hb_000106_100--Hb_000215_180 Hb_003349_070 Hb_003349_070 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000780_210 Hb_000780_210 Hb_000106_100--Hb_000780_210 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000896_120--Hb_000922_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_001377_380--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_001377_380--Hb_000635_080 Hb_002316_120 Hb_002316_120 Hb_001377_380--Hb_002316_120 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_001377_380--Hb_000300_390 Hb_000215_180--Hb_183086_040 Hb_000215_180--Hb_000922_100 Hb_000215_180--Hb_000780_210 Hb_000215_180--Hb_001377_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0427303 0.0177967 0 0.121831 0.0200243 0.0376242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293458 0.500088 0.212811 0.123675 0

CAGE analysis