Hb_002171_070

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2171: 153298-158882
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_002299922.2
description NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9GF31
description NBS-LRR resistance gene-like protein ARGH30 OS=Populus trichocarpa GN=POPTR_0001s26900g PE=4 SV=2
Gene Ontology
ID GO:0005515
description disease resistance protein at3g14460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002171_070 0.0 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
2 Hb_001596_040 0.0969002949 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
3 Hb_001013_040 0.1083742134 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
4 Hb_012019_020 0.1232074853 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
5 Hb_000556_200 0.1333345699 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
6 Hb_000462_020 0.1351105088 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_002269_030 0.1437938825 - - hypothetical protein CISIN_1g018400mg [Citrus sinensis]
8 Hb_008020_010 0.1464488584 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
9 Hb_003085_050 0.1495026294 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
10 Hb_001709_070 0.1499075649 - - carbohydrate binding protein, putative [Ricinus communis]
11 Hb_157122_010 0.1500744952 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
12 Hb_000101_050 0.1506912097 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_006919_010 0.1508169835 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
14 Hb_000043_080 0.151634611 - - lipid binding protein, putative [Ricinus communis]
15 Hb_002917_030 0.1530181492 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
16 Hb_001331_040 0.1534248463 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
17 Hb_003581_240 0.1544285453 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
18 Hb_004931_060 0.154941978 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
19 Hb_000381_030 0.1554520625 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
20 Hb_002400_250 0.15969412 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002171_070 Hb_002171_070 Hb_001596_040 Hb_001596_040 Hb_002171_070--Hb_001596_040 Hb_001013_040 Hb_001013_040 Hb_002171_070--Hb_001013_040 Hb_012019_020 Hb_012019_020 Hb_002171_070--Hb_012019_020 Hb_000556_200 Hb_000556_200 Hb_002171_070--Hb_000556_200 Hb_000462_020 Hb_000462_020 Hb_002171_070--Hb_000462_020 Hb_002269_030 Hb_002269_030 Hb_002171_070--Hb_002269_030 Hb_001596_040--Hb_012019_020 Hb_002917_030 Hb_002917_030 Hb_001596_040--Hb_002917_030 Hb_003086_200 Hb_003086_200 Hb_001596_040--Hb_003086_200 Hb_004931_060 Hb_004931_060 Hb_001596_040--Hb_004931_060 Hb_001596_040--Hb_000556_200 Hb_001856_060 Hb_001856_060 Hb_001013_040--Hb_001856_060 Hb_000381_030 Hb_000381_030 Hb_001013_040--Hb_000381_030 Hb_007875_070 Hb_007875_070 Hb_001013_040--Hb_007875_070 Hb_001331_040 Hb_001331_040 Hb_001013_040--Hb_001331_040 Hb_001013_040--Hb_012019_020 Hb_000101_050 Hb_000101_050 Hb_012019_020--Hb_000101_050 Hb_001952_110 Hb_001952_110 Hb_012019_020--Hb_001952_110 Hb_012019_020--Hb_007875_070 Hb_006452_050 Hb_006452_050 Hb_012019_020--Hb_006452_050 Hb_008503_020 Hb_008503_020 Hb_000556_200--Hb_008503_020 Hb_000043_080 Hb_000043_080 Hb_000556_200--Hb_000043_080 Hb_002007_230 Hb_002007_230 Hb_000556_200--Hb_002007_230 Hb_000556_200--Hb_003086_200 Hb_001489_030 Hb_001489_030 Hb_000556_200--Hb_001489_030 Hb_001663_100 Hb_001663_100 Hb_000462_020--Hb_001663_100 Hb_002400_250 Hb_002400_250 Hb_000462_020--Hb_002400_250 Hb_002374_110 Hb_002374_110 Hb_000462_020--Hb_002374_110 Hb_000692_180 Hb_000692_180 Hb_000462_020--Hb_000692_180 Hb_000462_020--Hb_004931_060 Hb_000462_020--Hb_001596_040 Hb_001514_210 Hb_001514_210 Hb_002269_030--Hb_001514_210 Hb_000625_060 Hb_000625_060 Hb_002269_030--Hb_000625_060 Hb_001621_020 Hb_001621_020 Hb_002269_030--Hb_001621_020 Hb_001355_110 Hb_001355_110 Hb_002269_030--Hb_001355_110 Hb_002686_390 Hb_002686_390 Hb_002269_030--Hb_002686_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0086965 0.283062 0.0831901 0.0152674 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.543095 0.0166269

CAGE analysis