Hb_002035_020

Information

Type transcription factor
Description TF Family: TRAF
Location Contig2035: 31000-32932
Sequence    

Annotation

kegg
ID vvi:100247744
description regulatory protein NPR3
nr
ID KJB69916.1
description hypothetical protein B456_011G050200 [Gossypium raimondii]
swissprot
ID P93002
description Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1
trembl
ID A0A0D2RH16
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G050200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20844: 31574-32355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002035_020 0.0 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
2 Hb_038718_010 0.1014987573 - - Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_048937_010 0.1131483847 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1 [Nelumbo nucifera]
4 Hb_000128_090 0.1165227703 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_004096_140 0.1167915128 - - Lipase, putative [Ricinus communis]
6 Hb_001019_140 0.124130112 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001213_080 0.1316509129 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
8 Hb_148914_020 0.1360768414 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
9 Hb_145268_010 0.1368636527 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
10 Hb_170632_010 0.1455244001 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_004218_220 0.1460372802 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_000172_310 0.1481584482 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
13 Hb_007313_050 0.1494747475 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_042491_010 0.1573936568 - - JHL06P13.14 [Jatropha curcas]
15 Hb_010642_010 0.1577027197 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
16 Hb_002894_040 0.1614642958 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000060_080 0.1617207243 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
18 Hb_138705_010 0.1635193736 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_006721_060 0.1639272764 - - RnaseH (mitochondrion) [Malus domestica]
20 Hb_002049_030 0.1664353199 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_002035_020 Hb_002035_020 Hb_038718_010 Hb_038718_010 Hb_002035_020--Hb_038718_010 Hb_048937_010 Hb_048937_010 Hb_002035_020--Hb_048937_010 Hb_000128_090 Hb_000128_090 Hb_002035_020--Hb_000128_090 Hb_004096_140 Hb_004096_140 Hb_002035_020--Hb_004096_140 Hb_001019_140 Hb_001019_140 Hb_002035_020--Hb_001019_140 Hb_001213_080 Hb_001213_080 Hb_002035_020--Hb_001213_080 Hb_038718_010--Hb_000128_090 Hb_010642_010 Hb_010642_010 Hb_038718_010--Hb_010642_010 Hb_170632_010 Hb_170632_010 Hb_038718_010--Hb_170632_010 Hb_011355_020 Hb_011355_020 Hb_038718_010--Hb_011355_020 Hb_033053_020 Hb_033053_020 Hb_038718_010--Hb_033053_020 Hb_145268_010 Hb_145268_010 Hb_048937_010--Hb_145268_010 Hb_048937_010--Hb_001019_140 Hb_048937_010--Hb_004096_140 Hb_048937_010--Hb_001213_080 Hb_048937_010--Hb_000128_090 Hb_148914_020 Hb_148914_020 Hb_000128_090--Hb_148914_020 Hb_000128_090--Hb_145268_010 Hb_000128_090--Hb_001213_080 Hb_000128_090--Hb_010642_010 Hb_004096_140--Hb_001019_140 Hb_006721_060 Hb_006721_060 Hb_004096_140--Hb_006721_060 Hb_003968_010 Hb_003968_010 Hb_004096_140--Hb_003968_010 Hb_138705_010 Hb_138705_010 Hb_004096_140--Hb_138705_010 Hb_000060_080 Hb_000060_080 Hb_004096_140--Hb_000060_080 Hb_001019_140--Hb_138705_010 Hb_002049_030 Hb_002049_030 Hb_001019_140--Hb_002049_030 Hb_001019_140--Hb_145268_010 Hb_001019_140--Hb_003968_010 Hb_007313_050 Hb_007313_050 Hb_001213_080--Hb_007313_050 Hb_001213_080--Hb_148914_020 Hb_001059_050 Hb_001059_050 Hb_001213_080--Hb_001059_050 Hb_000286_210 Hb_000286_210 Hb_001213_080--Hb_000286_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0522686 1.47963 0.865764 2.34833 0.0218331 0.011423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.440729 0

CAGE analysis