Hb_001124_150

Information

Type -
Description -
Location Contig1124: 184512-185288
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_150 0.0 - - -
2 Hb_123560_010 0.1581126344 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
3 Hb_005563_020 0.1589263393 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
4 Hb_078903_010 0.1596806225 - - Osmotin precursor, putative [Ricinus communis]
5 Hb_001652_060 0.1636786054 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
6 Hb_012136_010 0.1654406922 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
7 Hb_005066_060 0.1655926881 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
8 Hb_006533_010 0.171768918 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
9 Hb_002184_040 0.1735065211 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
10 Hb_001142_040 0.1741182609 - - PREDICTED: protein YLS9 [Jatropha curcas]
11 Hb_003857_010 0.1769102301 - - conserved hypothetical protein [Ricinus communis]
12 Hb_119748_010 0.1797950242 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_007926_020 0.1808138067 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
14 Hb_019708_010 0.1889073561 - - -
15 Hb_038135_010 0.1911001716 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
16 Hb_000560_050 0.1982392006 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
17 Hb_015146_010 0.203267744 - - -
18 Hb_041362_010 0.2044694248 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
19 Hb_000836_400 0.2086591855 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 1 [Jatropha curcas]
20 Hb_001019_220 0.2116397119 - - hypothetical protein POPTR_0004s19470g [Populus trichocarpa]

Gene co-expression network

sample Hb_001124_150 Hb_001124_150 Hb_123560_010 Hb_123560_010 Hb_001124_150--Hb_123560_010 Hb_005563_020 Hb_005563_020 Hb_001124_150--Hb_005563_020 Hb_078903_010 Hb_078903_010 Hb_001124_150--Hb_078903_010 Hb_001652_060 Hb_001652_060 Hb_001124_150--Hb_001652_060 Hb_012136_010 Hb_012136_010 Hb_001124_150--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_001124_150--Hb_005066_060 Hb_123560_010--Hb_078903_010 Hb_123560_010--Hb_005563_020 Hb_123560_010--Hb_001652_060 Hb_123560_010--Hb_012136_010 Hb_123560_010--Hb_005066_060 Hb_002184_040 Hb_002184_040 Hb_123560_010--Hb_002184_040 Hb_005563_020--Hb_012136_010 Hb_005563_020--Hb_005066_060 Hb_005563_020--Hb_078903_010 Hb_006533_010 Hb_006533_010 Hb_005563_020--Hb_006533_010 Hb_005563_020--Hb_001652_060 Hb_078903_010--Hb_001652_060 Hb_078903_010--Hb_002184_040 Hb_001142_040 Hb_001142_040 Hb_078903_010--Hb_001142_040 Hb_003857_010 Hb_003857_010 Hb_078903_010--Hb_003857_010 Hb_001652_060--Hb_002184_040 Hb_001652_060--Hb_001142_040 Hb_001652_060--Hb_003857_010 Hb_007926_020 Hb_007926_020 Hb_001652_060--Hb_007926_020 Hb_012136_010--Hb_005066_060 Hb_012136_010--Hb_006533_010 Hb_119748_010 Hb_119748_010 Hb_012136_010--Hb_119748_010 Hb_019708_010 Hb_019708_010 Hb_012136_010--Hb_019708_010 Hb_005066_060--Hb_006533_010 Hb_005066_060--Hb_119748_010 Hb_005066_060--Hb_019708_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0688672 0 0.256497 0 0.0543249 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.13147 0

CAGE analysis