Hb_000735_010

Information

Type -
Description -
Location Contig735: 4325-6028
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_010 0.0 - - -
2 Hb_000544_120 0.1836709952 - - PREDICTED: thymidylate kinase [Jatropha curcas]
3 Hb_000018_160 0.1919889244 - - nitrate transporter, putative [Ricinus communis]
4 Hb_000173_210 0.1992502513 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
5 Hb_006631_010 0.2010413303 - - plasma membrane aquaporin 2 [Hevea brasiliensis]
6 Hb_002897_040 0.2016428877 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
7 Hb_001935_190 0.2076436223 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
8 Hb_000329_540 0.2138956436 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
9 Hb_022749_030 0.2143237139 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_000619_070 0.2143440736 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
11 Hb_063409_020 0.2147779448 - - Calcium-binding protein, putative [Ricinus communis]
12 Hb_035360_010 0.2161346111 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
13 Hb_000156_030 0.2166956574 - - conserved hypothetical protein [Ricinus communis]
14 Hb_105427_010 0.2178888912 - - -
15 Hb_000040_050 0.2181490974 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
16 Hb_061256_030 0.2215223552 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_050686_010 0.223815662 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000056_120 0.2274990082 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_006960_030 0.228457752 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
20 Hb_000200_060 0.2326525211 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]

Gene co-expression network

sample Hb_000735_010 Hb_000735_010 Hb_000544_120 Hb_000544_120 Hb_000735_010--Hb_000544_120 Hb_000018_160 Hb_000018_160 Hb_000735_010--Hb_000018_160 Hb_000173_210 Hb_000173_210 Hb_000735_010--Hb_000173_210 Hb_006631_010 Hb_006631_010 Hb_000735_010--Hb_006631_010 Hb_002897_040 Hb_002897_040 Hb_000735_010--Hb_002897_040 Hb_001935_190 Hb_001935_190 Hb_000735_010--Hb_001935_190 Hb_000544_120--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000544_120--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000544_120--Hb_000619_070 Hb_000544_120--Hb_002897_040 Hb_000544_120--Hb_000173_210 Hb_000544_120--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_000018_160--Hb_000211_080 Hb_000018_160--Hb_035360_010 Hb_005568_070 Hb_005568_070 Hb_000018_160--Hb_005568_070 Hb_000018_160--Hb_000619_070 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100 Hb_000392_280 Hb_000392_280 Hb_000173_210--Hb_000392_280 Hb_000173_370 Hb_000173_370 Hb_000173_210--Hb_000173_370 Hb_000173_210--Hb_002897_040 Hb_000173_210--Hb_000619_070 Hb_000173_210--Hb_006631_010 Hb_000173_210--Hb_035360_010 Hb_006631_010--Hb_002897_040 Hb_006631_010--Hb_000619_070 Hb_000016_280 Hb_000016_280 Hb_006631_010--Hb_000016_280 Hb_006631_010--Hb_035360_010 Hb_000608_340 Hb_000608_340 Hb_006631_010--Hb_000608_340 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_002897_040--Hb_000173_370 Hb_120662_010 Hb_120662_010 Hb_001935_190--Hb_120662_010 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001916_060 Hb_001916_060 Hb_001935_190--Hb_001916_060 Hb_000329_420 Hb_000329_420 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17137 0.228497 0.312431 0.257149 1.61408 0.972639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.180979 0 0.230994 0 0

CAGE analysis