Hb_000392_100

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig392: 75974-76264
Sequence    

Annotation

kegg
ID rcu:RCOM_1472500
description transcription factor, putative
nr
ID XP_002514762.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9CA51
description Mini zinc finger protein 1 OS=Arabidopsis thaliana GN=MIF1 PE=1 SV=1
trembl
ID B9RLZ3
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1472500 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mini zinc finger protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_100 0.0 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
2 Hb_015401_030 0.1829272372 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_002248_140 0.1839353498 - - acetylglucosaminyltransferase, putative [Ricinus communis]
4 Hb_000139_240 0.1839388875 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
5 Hb_002493_100 0.1927101852 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
6 Hb_002270_010 0.1945636801 - - Chaperone protein dnaJ, putative [Ricinus communis]
7 Hb_000186_040 0.1961458474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_030291_020 0.1972547318 - - PREDICTED: protein argonaute 5 isoform X2 [Jatropha curcas]
9 Hb_002002_030 0.2048158232 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_067466_010 0.2060130062 - - ankyrin repeat protein [Bruguiera gymnorhiza]
11 Hb_007694_050 0.2093600276 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
12 Hb_000352_090 0.2101287102 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
13 Hb_000209_020 0.211110108 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
14 Hb_005122_060 0.2121186073 - - unnamed protein product [Vitis vinifera]
15 Hb_000987_140 0.2138467086 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
16 Hb_001274_020 0.2146122285 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
17 Hb_004310_050 0.2146618151 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_015401_020 0.2153343634 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_005144_040 0.2161427063 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
20 Hb_011344_170 0.2163698798 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]

Gene co-expression network

sample Hb_000392_100 Hb_000392_100 Hb_015401_030 Hb_015401_030 Hb_000392_100--Hb_015401_030 Hb_002248_140 Hb_002248_140 Hb_000392_100--Hb_002248_140 Hb_000139_240 Hb_000139_240 Hb_000392_100--Hb_000139_240 Hb_002493_100 Hb_002493_100 Hb_000392_100--Hb_002493_100 Hb_002270_010 Hb_002270_010 Hb_000392_100--Hb_002270_010 Hb_000186_040 Hb_000186_040 Hb_000392_100--Hb_000186_040 Hb_005914_090 Hb_005914_090 Hb_015401_030--Hb_005914_090 Hb_113216_010 Hb_113216_010 Hb_015401_030--Hb_113216_010 Hb_003299_090 Hb_003299_090 Hb_015401_030--Hb_003299_090 Hb_057490_010 Hb_057490_010 Hb_015401_030--Hb_057490_010 Hb_001523_010 Hb_001523_010 Hb_015401_030--Hb_001523_010 Hb_001439_180 Hb_001439_180 Hb_015401_030--Hb_001439_180 Hb_027028_020 Hb_027028_020 Hb_002248_140--Hb_027028_020 Hb_000920_040 Hb_000920_040 Hb_002248_140--Hb_000920_040 Hb_000866_030 Hb_000866_030 Hb_002248_140--Hb_000866_030 Hb_004310_050 Hb_004310_050 Hb_002248_140--Hb_004310_050 Hb_000915_050 Hb_000915_050 Hb_002248_140--Hb_000915_050 Hb_002196_020 Hb_002196_020 Hb_002248_140--Hb_002196_020 Hb_000209_020 Hb_000209_020 Hb_000139_240--Hb_000209_020 Hb_005324_010 Hb_005324_010 Hb_000139_240--Hb_005324_010 Hb_005306_130 Hb_005306_130 Hb_000139_240--Hb_005306_130 Hb_000139_240--Hb_002270_010 Hb_000011_080 Hb_000011_080 Hb_000139_240--Hb_000011_080 Hb_004734_060 Hb_004734_060 Hb_000139_240--Hb_004734_060 Hb_004225_020 Hb_004225_020 Hb_002493_100--Hb_004225_020 Hb_002026_100 Hb_002026_100 Hb_002493_100--Hb_002026_100 Hb_002039_010 Hb_002039_010 Hb_002493_100--Hb_002039_010 Hb_002027_120 Hb_002027_120 Hb_002493_100--Hb_002027_120 Hb_001001_060 Hb_001001_060 Hb_002493_100--Hb_001001_060 Hb_001516_100 Hb_001516_100 Hb_002493_100--Hb_001516_100 Hb_005144_040 Hb_005144_040 Hb_002270_010--Hb_005144_040 Hb_000076_290 Hb_000076_290 Hb_002270_010--Hb_000076_290 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_002270_010--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_002270_010--Hb_015401_020 Hb_000186_040--Hb_002270_010 Hb_001975_070 Hb_001975_070 Hb_000186_040--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_000186_040--Hb_011930_010 Hb_005147_110 Hb_005147_110 Hb_000186_040--Hb_005147_110 Hb_000186_040--Hb_000076_290 Hb_001341_030 Hb_001341_030 Hb_000186_040--Hb_001341_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7462 16.0053 0.46446 9.88511 15.0497 29.7378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61892 9.25262 14.7283 11.1377 0.483737

CAGE analysis