Hb_000313_210

Information

Type -
Description -
Location Contig313: 310542-314573
Sequence    

Annotation

kegg
ID rcu:RCOM_2011450
description hypothetical protein
nr
ID XP_002537453.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TGT4
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2011450 PE=4 SV=1
Gene Ontology
ID GO:0005634
description repressor of rna polymerase iii transcription maf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33138: 311742-312060 , PASA_asmbl_33139: 312185-312814 , PASA_asmbl_33140: 313635-314357 , PASA_asmbl_33141: 313982-314538 , PASA_asmbl_33142: 314590-314952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009491_040 0.2003843984 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
3 Hb_000705_160 0.2029631847 - - hypothetical protein CISIN_1g042743mg [Citrus sinensis]
4 Hb_001493_180 0.2038347181 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
5 Hb_000138_110 0.2065154547 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
6 Hb_017110_010 0.2098468366 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
7 Hb_002027_040 0.2126248719 - - synapse-associated protein, putative [Ricinus communis]
8 Hb_003992_170 0.2168608266 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
9 Hb_000836_040 0.2169501675 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_001544_030 0.2192691589 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
11 Hb_005162_070 0.219603667 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000010_340 0.2222789481 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
13 Hb_005211_160 0.2249103822 - - Protein PNS1, putative [Ricinus communis]
14 Hb_000147_040 0.2262687418 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
15 Hb_001946_330 0.2281275622 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
16 Hb_001140_220 0.2289841214 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000258_270 0.2298656148 - - PREDICTED: cullin-3A [Jatropha curcas]
18 Hb_000085_400 0.2314573166 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
19 Hb_001817_020 0.2325984572 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
20 Hb_000629_120 0.2337242944 - - Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000313_210 Hb_000313_210 Hb_009491_040 Hb_009491_040 Hb_000313_210--Hb_009491_040 Hb_000705_160 Hb_000705_160 Hb_000313_210--Hb_000705_160 Hb_001493_180 Hb_001493_180 Hb_000313_210--Hb_001493_180 Hb_000138_110 Hb_000138_110 Hb_000313_210--Hb_000138_110 Hb_017110_010 Hb_017110_010 Hb_000313_210--Hb_017110_010 Hb_002027_040 Hb_002027_040 Hb_000313_210--Hb_002027_040 Hb_000934_270 Hb_000934_270 Hb_009491_040--Hb_000934_270 Hb_000576_040 Hb_000576_040 Hb_009491_040--Hb_000576_040 Hb_000479_130 Hb_000479_130 Hb_009491_040--Hb_000479_130 Hb_006922_030 Hb_006922_030 Hb_009491_040--Hb_006922_030 Hb_000173_230 Hb_000173_230 Hb_009491_040--Hb_000173_230 Hb_000297_200 Hb_000297_200 Hb_009491_040--Hb_000297_200 Hb_003992_170 Hb_003992_170 Hb_000705_160--Hb_003992_170 Hb_000062_560 Hb_000062_560 Hb_000705_160--Hb_000062_560 Hb_000705_160--Hb_017110_010 Hb_000836_040 Hb_000836_040 Hb_000705_160--Hb_000836_040 Hb_000749_270 Hb_000749_270 Hb_000705_160--Hb_000749_270 Hb_005162_070 Hb_005162_070 Hb_000705_160--Hb_005162_070 Hb_001090_050 Hb_001090_050 Hb_001493_180--Hb_001090_050 Hb_000260_570 Hb_000260_570 Hb_001493_180--Hb_000260_570 Hb_001493_180--Hb_005162_070 Hb_001817_020 Hb_001817_020 Hb_001493_180--Hb_001817_020 Hb_001189_050 Hb_001189_050 Hb_001493_180--Hb_001189_050 Hb_011030_020 Hb_011030_020 Hb_001493_180--Hb_011030_020 Hb_000092_010 Hb_000092_010 Hb_000138_110--Hb_000092_010 Hb_004079_030 Hb_004079_030 Hb_000138_110--Hb_004079_030 Hb_000258_270 Hb_000258_270 Hb_000138_110--Hb_000258_270 Hb_000629_120 Hb_000629_120 Hb_000138_110--Hb_000629_120 Hb_000096_010 Hb_000096_010 Hb_000138_110--Hb_000096_010 Hb_000138_110--Hb_002027_040 Hb_017110_010--Hb_000629_120 Hb_181288_020 Hb_181288_020 Hb_017110_010--Hb_181288_020 Hb_000161_060 Hb_000161_060 Hb_017110_010--Hb_000161_060 Hb_003032_010 Hb_003032_010 Hb_017110_010--Hb_003032_010 Hb_017110_010--Hb_000138_110 Hb_000479_200 Hb_000479_200 Hb_017110_010--Hb_000479_200 Hb_002027_040--Hb_005162_070 Hb_020805_130 Hb_020805_130 Hb_002027_040--Hb_020805_130 Hb_002027_040--Hb_004079_030 Hb_000567_120 Hb_000567_120 Hb_002027_040--Hb_000567_120 Hb_148113_010 Hb_148113_010 Hb_002027_040--Hb_148113_010 Hb_002027_040--Hb_000260_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.543749 0.119706 0.0553953 0.335474 0.10474 0.140627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0820469 0.386995 0.91965 0.105019 0.382215

CAGE analysis