Hb_000261_040

Information

Type -
Description -
Location Contig261: 29499-29885
Sequence    

Annotation

kegg
ID cit:102627523
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006492639.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID Q9SI81
description F23N19.5 OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID GO:0003824
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_000703_090 0.1018613786 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
3 Hb_001655_070 0.126439113 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
4 Hb_000622_310 0.127265281 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_000787_110 0.1302343229 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
6 Hb_000172_400 0.1309188049 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_001454_060 0.1323281243 - - uncharacterized protein LOC100527252 [Glycine max]
8 Hb_000418_100 0.132926998 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
9 Hb_003494_240 0.1344557278 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
10 Hb_002400_070 0.1346821087 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
11 Hb_002686_270 0.1356649378 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000009_550 0.137145643 - - hypothetical protein RCOM_0603640 [Ricinus communis]
13 Hb_001246_100 0.1381466795 - - Ras-related small GTP-binding family protein [Theobroma cacao]
14 Hb_000156_130 0.1389955219 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
15 Hb_143813_010 0.1390600638 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]
16 Hb_000027_270 0.1393049517 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
17 Hb_008959_030 0.1404060527 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
18 Hb_001817_180 0.1408653986 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
19 Hb_000188_100 0.1413533947 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
20 Hb_182026_020 0.1429012512 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000261_040 Hb_000261_040 Hb_000703_090 Hb_000703_090 Hb_000261_040--Hb_000703_090 Hb_001655_070 Hb_001655_070 Hb_000261_040--Hb_001655_070 Hb_000622_310 Hb_000622_310 Hb_000261_040--Hb_000622_310 Hb_000787_110 Hb_000787_110 Hb_000261_040--Hb_000787_110 Hb_000172_400 Hb_000172_400 Hb_000261_040--Hb_000172_400 Hb_001454_060 Hb_001454_060 Hb_000261_040--Hb_001454_060 Hb_003494_240 Hb_003494_240 Hb_000703_090--Hb_003494_240 Hb_002215_050 Hb_002215_050 Hb_000703_090--Hb_002215_050 Hb_015941_030 Hb_015941_030 Hb_000703_090--Hb_015941_030 Hb_001124_210 Hb_001124_210 Hb_000703_090--Hb_001124_210 Hb_024714_030 Hb_024714_030 Hb_000703_090--Hb_024714_030 Hb_000386_040 Hb_000386_040 Hb_000703_090--Hb_000386_040 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_008959_030 Hb_008959_030 Hb_001655_070--Hb_008959_030 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_001655_070--Hb_015941_030 Hb_000124_020 Hb_000124_020 Hb_000622_310--Hb_000124_020 Hb_010863_080 Hb_010863_080 Hb_000622_310--Hb_010863_080 Hb_000186_240 Hb_000186_240 Hb_000622_310--Hb_000186_240 Hb_000592_050 Hb_000592_050 Hb_000622_310--Hb_000592_050 Hb_000622_310--Hb_000172_400 Hb_000179_210 Hb_000179_210 Hb_000622_310--Hb_000179_210 Hb_000188_100 Hb_000188_100 Hb_000787_110--Hb_000188_100 Hb_010710_110 Hb_010710_110 Hb_000787_110--Hb_010710_110 Hb_000554_020 Hb_000554_020 Hb_000787_110--Hb_000554_020 Hb_000406_220 Hb_000406_220 Hb_000787_110--Hb_000406_220 Hb_002810_020 Hb_002810_020 Hb_000787_110--Hb_002810_020 Hb_001488_330 Hb_001488_330 Hb_000787_110--Hb_001488_330 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_003638_030 Hb_003638_030 Hb_000172_400--Hb_003638_030 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.24648 7.53129 0.0761923 4.98356 16.1674 18.5208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3257 13.6885 11.6314 4.89734 0.870082

CAGE analysis