Hb_000243_320

Information

Type -
Description -
Location Contig243: 290107-297728
Sequence    

Annotation

kegg
ID rcu:RCOM_0291720
description hypothetical protein
nr
ID XP_002531511.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LNZ2
description Kinesin-like protein NACK2 OS=Arabidopsis thaliana GN=NACK2 PE=1 SV=1
trembl
ID B9SZU2
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0291720 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein nack1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25399: 290160-294276 , PASA_asmbl_25400: 296068-297680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000497_230 0.1234155868 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
3 Hb_001846_060 0.1322692454 - - hypothetical protein RCOM_0992860 [Ricinus communis]
4 Hb_000329_390 0.1339232771 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_000042_270 0.1370795779 - - myosin vIII, putative [Ricinus communis]
6 Hb_000742_250 0.1449849671 - - Tubulin beta-6 chain [Gossypium arboreum]
7 Hb_014361_100 0.1459374984 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
8 Hb_030827_030 0.1468123996 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
9 Hb_005368_010 0.1479874788 - - PREDICTED: umecyanin-like [Jatropha curcas]
10 Hb_000540_140 0.148095844 - - zinc binding dehydrogenase, putative [Ricinus communis]
11 Hb_001638_290 0.1489816674 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
12 Hb_000281_100 0.1501024634 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
13 Hb_009421_100 0.1501203725 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
14 Hb_000197_210 0.1517300888 - - phosphatidylinositol transporter, putative [Ricinus communis]
15 Hb_011316_110 0.1518126368 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
16 Hb_006130_010 0.1531465923 - - PREDICTED: CTP synthase [Jatropha curcas]
17 Hb_002400_270 0.1542935435 - - PREDICTED: probable sucrose-phosphate synthase 1 isoform X1 [Jatropha curcas]
18 Hb_011644_020 0.1547370161 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
19 Hb_000175_490 0.1550359916 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
20 Hb_000836_630 0.1567959415 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_320 Hb_000243_320 Hb_000497_230 Hb_000497_230 Hb_000243_320--Hb_000497_230 Hb_001846_060 Hb_001846_060 Hb_000243_320--Hb_001846_060 Hb_000329_390 Hb_000329_390 Hb_000243_320--Hb_000329_390 Hb_000042_270 Hb_000042_270 Hb_000243_320--Hb_000042_270 Hb_000742_250 Hb_000742_250 Hb_000243_320--Hb_000742_250 Hb_014361_100 Hb_014361_100 Hb_000243_320--Hb_014361_100 Hb_018954_020 Hb_018954_020 Hb_000497_230--Hb_018954_020 Hb_000197_210 Hb_000197_210 Hb_000497_230--Hb_000197_210 Hb_008406_140 Hb_008406_140 Hb_000497_230--Hb_008406_140 Hb_001279_330 Hb_001279_330 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_002159_040 Hb_002159_040 Hb_000497_230--Hb_002159_040 Hb_001846_060--Hb_000742_250 Hb_002400_270 Hb_002400_270 Hb_001846_060--Hb_002400_270 Hb_000369_060 Hb_000369_060 Hb_001846_060--Hb_000369_060 Hb_011644_020 Hb_011644_020 Hb_001846_060--Hb_011644_020 Hb_007786_010 Hb_007786_010 Hb_001846_060--Hb_007786_010 Hb_011316_110 Hb_011316_110 Hb_001846_060--Hb_011316_110 Hb_000329_390--Hb_014361_100 Hb_022256_040 Hb_022256_040 Hb_000329_390--Hb_022256_040 Hb_001348_050 Hb_001348_050 Hb_000329_390--Hb_001348_050 Hb_000345_530 Hb_000345_530 Hb_000329_390--Hb_000345_530 Hb_011282_030 Hb_011282_030 Hb_000329_390--Hb_011282_030 Hb_002997_100 Hb_002997_100 Hb_000329_390--Hb_002997_100 Hb_000042_270--Hb_000197_210 Hb_006816_390 Hb_006816_390 Hb_000042_270--Hb_006816_390 Hb_000679_130 Hb_000679_130 Hb_000042_270--Hb_000679_130 Hb_000034_050 Hb_000034_050 Hb_000042_270--Hb_000034_050 Hb_000236_380 Hb_000236_380 Hb_000042_270--Hb_000236_380 Hb_000836_630 Hb_000836_630 Hb_000042_270--Hb_000836_630 Hb_000742_250--Hb_002400_270 Hb_006649_080 Hb_006649_080 Hb_000742_250--Hb_006649_080 Hb_185467_010 Hb_185467_010 Hb_000742_250--Hb_185467_010 Hb_000742_250--Hb_007786_010 Hb_004096_020 Hb_004096_020 Hb_000742_250--Hb_004096_020 Hb_014361_100--Hb_001348_050 Hb_014361_100--Hb_000236_380 Hb_001584_290 Hb_001584_290 Hb_014361_100--Hb_001584_290 Hb_000322_090 Hb_000322_090 Hb_014361_100--Hb_000322_090 Hb_014361_100--Hb_000042_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9105 3.03606 11.2303 8.20551 38.9725 31.4576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4131 4.49184 16.7733 2.20921 10.0634

CAGE analysis