Hb_000164_180

Information

Type -
Description -
Location Contig164: 147278-149844
Sequence    

Annotation

kegg
ID rcu:RCOM_0179780
description (+)-delta-cadinene synthase isozyme A, putative (EC:4.2.3.13)
nr
ID XP_002522812.1
description (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
swissprot
ID B9S9Z3
description Alpha-copaene synthase OS=Ricinus communis GN=TPS1 PE=1 SV=1
trembl
ID A0A067L3D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00777 PE=4 SV=1
Gene Ontology
ID GO:0000287
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_180 0.0 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
2 Hb_000871_020 0.129115626 - - receptor-kinase, putative [Ricinus communis]
3 Hb_015473_020 0.1334789848 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
4 Hb_009740_010 0.137562216 - - receptor-kinase, putative [Ricinus communis]
5 Hb_128894_010 0.1392076017 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_106595_010 0.1399497942 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
7 Hb_034558_010 0.1401676467 - - -
8 Hb_004940_090 0.140701872 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_044724_020 0.1416396046 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
10 Hb_000215_380 0.1440707499 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
11 Hb_007328_020 0.144422288 - - -
12 Hb_000563_370 0.1446331045 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
13 Hb_007264_050 0.1463236583 - - -
14 Hb_001766_090 0.1467280756 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
15 Hb_005000_230 0.1481721729 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
16 Hb_126024_010 0.1491748524 - - PREDICTED: probable aldo-keto reductase 1 [Populus euphratica]
17 Hb_000016_290 0.1495233814 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_007658_030 0.1495565832 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
19 Hb_000484_050 0.1523358607 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
20 Hb_030593_010 0.1530094484 - - hypothetical protein JCGZ_06063 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_180 Hb_000164_180 Hb_000871_020 Hb_000871_020 Hb_000164_180--Hb_000871_020 Hb_015473_020 Hb_015473_020 Hb_000164_180--Hb_015473_020 Hb_009740_010 Hb_009740_010 Hb_000164_180--Hb_009740_010 Hb_128894_010 Hb_128894_010 Hb_000164_180--Hb_128894_010 Hb_106595_010 Hb_106595_010 Hb_000164_180--Hb_106595_010 Hb_034558_010 Hb_034558_010 Hb_000164_180--Hb_034558_010 Hb_000871_020--Hb_009740_010 Hb_011924_030 Hb_011924_030 Hb_000871_020--Hb_011924_030 Hb_023827_010 Hb_023827_010 Hb_000871_020--Hb_023827_010 Hb_030593_010 Hb_030593_010 Hb_000871_020--Hb_030593_010 Hb_001766_090 Hb_001766_090 Hb_000871_020--Hb_001766_090 Hb_064855_010 Hb_064855_010 Hb_000871_020--Hb_064855_010 Hb_028487_080 Hb_028487_080 Hb_015473_020--Hb_028487_080 Hb_001821_070 Hb_001821_070 Hb_015473_020--Hb_001821_070 Hb_005529_050 Hb_005529_050 Hb_015473_020--Hb_005529_050 Hb_000522_020 Hb_000522_020 Hb_015473_020--Hb_000522_020 Hb_000846_020 Hb_000846_020 Hb_015473_020--Hb_000846_020 Hb_000501_180 Hb_000501_180 Hb_015473_020--Hb_000501_180 Hb_009740_010--Hb_023827_010 Hb_009740_010--Hb_030593_010 Hb_009740_010--Hb_001766_090 Hb_007658_030 Hb_007658_030 Hb_009740_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_009740_010--Hb_000484_050 Hb_128894_010--Hb_106595_010 Hb_128894_010--Hb_034558_010 Hb_044724_020 Hb_044724_020 Hb_128894_010--Hb_044724_020 Hb_000215_380 Hb_000215_380 Hb_128894_010--Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_128894_010--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_128894_010--Hb_000563_370 Hb_106595_010--Hb_044724_020 Hb_106595_010--Hb_000215_380 Hb_106595_010--Hb_007328_020 Hb_106595_010--Hb_000563_370 Hb_106595_010--Hb_034558_010 Hb_034558_010--Hb_007658_030 Hb_034558_010--Hb_001766_090 Hb_034558_010--Hb_044724_020 Hb_034558_010--Hb_000484_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.00206 0 0 0 0.0323438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.140544 0.092537

CAGE analysis