Hb_000120_260

Information

Type -
Description -
Location Contig120: 185523-189418
Sequence    

Annotation

kegg
ID rcu:RCOM_0612740
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012067245.1
description PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
swissprot
ID Q8RXN0
description ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1
trembl
ID A0A067LDA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08443 PE=3 SV=1
Gene Ontology
ID GO:0009897
description abc transporter g family member 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06093: 185671-189447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_260 0.0 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
2 Hb_000051_130 0.0614143559 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_000187_020 0.0926762528 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
4 Hb_010737_030 0.098931878 - - unnamed protein product [Vitis vinifera]
5 Hb_018663_010 0.1018472776 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
6 Hb_000436_110 0.1036042817 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
7 Hb_000496_100 0.1091232986 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
8 Hb_102900_010 0.1092345766 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
9 Hb_000445_320 0.1095299928 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
10 Hb_008165_010 0.1095538832 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
11 Hb_000028_010 0.1129468314 - - cytochrome P450, putative [Ricinus communis]
12 Hb_059832_010 0.1170600514 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
13 Hb_000243_180 0.1173800746 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
14 Hb_000375_200 0.1180464662 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
15 Hb_004003_020 0.1193559927 - - unnamed protein product [Coffea canephora]
16 Hb_000751_010 0.1194433532 - - conserved hypothetical protein [Ricinus communis]
17 Hb_031862_190 0.1217794728 - - -
18 Hb_102129_040 0.1252936575 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
19 Hb_003411_070 0.1254038316 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
20 Hb_000160_260 0.12763855 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_260 Hb_000120_260 Hb_000051_130 Hb_000051_130 Hb_000120_260--Hb_000051_130 Hb_000187_020 Hb_000187_020 Hb_000120_260--Hb_000187_020 Hb_010737_030 Hb_010737_030 Hb_000120_260--Hb_010737_030 Hb_018663_010 Hb_018663_010 Hb_000120_260--Hb_018663_010 Hb_000436_110 Hb_000436_110 Hb_000120_260--Hb_000436_110 Hb_000496_100 Hb_000496_100 Hb_000120_260--Hb_000496_100 Hb_000051_130--Hb_000187_020 Hb_000051_130--Hb_010737_030 Hb_000051_130--Hb_000496_100 Hb_000051_130--Hb_018663_010 Hb_059832_010 Hb_059832_010 Hb_000051_130--Hb_059832_010 Hb_000445_320 Hb_000445_320 Hb_000187_020--Hb_000445_320 Hb_000375_200 Hb_000375_200 Hb_000187_020--Hb_000375_200 Hb_000187_020--Hb_059832_010 Hb_000193_170 Hb_000193_170 Hb_000187_020--Hb_000193_170 Hb_000130_400 Hb_000130_400 Hb_000187_020--Hb_000130_400 Hb_010737_030--Hb_000496_100 Hb_010737_030--Hb_018663_010 Hb_102900_010 Hb_102900_010 Hb_010737_030--Hb_102900_010 Hb_010737_030--Hb_000436_110 Hb_008165_010 Hb_008165_010 Hb_010737_030--Hb_008165_010 Hb_010737_030--Hb_000375_200 Hb_018663_010--Hb_008165_010 Hb_018663_010--Hb_000375_200 Hb_018663_010--Hb_000436_110 Hb_018663_010--Hb_000496_100 Hb_018663_010--Hb_102900_010 Hb_000436_110--Hb_008165_010 Hb_000436_110--Hb_102900_010 Hb_000751_010 Hb_000751_010 Hb_000436_110--Hb_000751_010 Hb_003226_040 Hb_003226_040 Hb_000436_110--Hb_003226_040 Hb_028486_020 Hb_028486_020 Hb_000496_100--Hb_028486_020 Hb_000496_100--Hb_102900_010 Hb_000496_100--Hb_000130_400 Hb_000496_100--Hb_008165_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142729 0.27665 81.3565 17.8878 0.0524498 0.436756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588461 0.299624 0.493497 0.210893 13.8147

CAGE analysis