Hb_000062_570

Information

Type -
Description -
Location Contig62: 391061-392089
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_570 0.0 - - -
2 Hb_000031_030 0.1478680447 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
3 Hb_005167_040 0.1789488916 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
4 Hb_000364_010 0.1807887302 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
5 Hb_006487_050 0.1823727808 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
6 Hb_000170_250 0.1860881749 - - hypothetical protein F775_29828 [Aegilops tauschii]
7 Hb_000920_240 0.1927992448 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
8 Hb_000347_200 0.1959666642 - - lsm1, putative [Ricinus communis]
9 Hb_000049_120 0.1990484834 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
10 Hb_008511_050 0.2007352963 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
11 Hb_000173_340 0.2019526114 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
12 Hb_002248_140 0.202507203 - - acetylglucosaminyltransferase, putative [Ricinus communis]
13 Hb_006198_080 0.2033747539 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
14 Hb_000700_110 0.2048896829 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_000082_080 0.2063370121 - - putative polyol transporter protein 1 [Hevea brasiliensis]
16 Hb_000436_080 0.2069769844 - - unnamed protein product [Coffea canephora]
17 Hb_001128_060 0.2070199426 - - amino acid permease, putative [Ricinus communis]
18 Hb_002046_190 0.2072527941 - - calcium-binding family protein [Populus trichocarpa]
19 Hb_002119_060 0.2089399858 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
20 Hb_000914_070 0.2108617093 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000062_570 Hb_000062_570 Hb_000031_030 Hb_000031_030 Hb_000062_570--Hb_000031_030 Hb_005167_040 Hb_005167_040 Hb_000062_570--Hb_005167_040 Hb_000364_010 Hb_000364_010 Hb_000062_570--Hb_000364_010 Hb_006487_050 Hb_006487_050 Hb_000062_570--Hb_006487_050 Hb_000170_250 Hb_000170_250 Hb_000062_570--Hb_000170_250 Hb_000920_240 Hb_000920_240 Hb_000062_570--Hb_000920_240 Hb_000031_030--Hb_000364_010 Hb_000204_040 Hb_000204_040 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_000031_030--Hb_006487_050 Hb_001696_030 Hb_001696_030 Hb_005167_040--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_005167_040--Hb_023988_020 Hb_000258_080 Hb_000258_080 Hb_005167_040--Hb_000258_080 Hb_007766_010 Hb_007766_010 Hb_005167_040--Hb_007766_010 Hb_005167_040--Hb_000031_030 Hb_000082_080 Hb_000082_080 Hb_005167_040--Hb_000082_080 Hb_000364_010--Hb_000204_040 Hb_000364_010--Hb_006487_050 Hb_000620_080 Hb_000620_080 Hb_000364_010--Hb_000620_080 Hb_141131_010 Hb_141131_010 Hb_000364_010--Hb_141131_010 Hb_006816_390 Hb_006816_390 Hb_000364_010--Hb_006816_390 Hb_000069_160 Hb_000069_160 Hb_006487_050--Hb_000069_160 Hb_137403_010 Hb_137403_010 Hb_006487_050--Hb_137403_010 Hb_006487_050--Hb_000620_080 Hb_000606_080 Hb_000606_080 Hb_006487_050--Hb_000606_080 Hb_002217_310 Hb_002217_310 Hb_006487_050--Hb_002217_310 Hb_002615_040 Hb_002615_040 Hb_000170_250--Hb_002615_040 Hb_005725_080 Hb_005725_080 Hb_000170_250--Hb_005725_080 Hb_001357_140 Hb_001357_140 Hb_000170_250--Hb_001357_140 Hb_004204_140 Hb_004204_140 Hb_000170_250--Hb_004204_140 Hb_001128_060 Hb_001128_060 Hb_000170_250--Hb_001128_060 Hb_000134_110 Hb_000134_110 Hb_000170_250--Hb_000134_110 Hb_000030_150 Hb_000030_150 Hb_000920_240--Hb_000030_150 Hb_003787_020 Hb_003787_020 Hb_000920_240--Hb_003787_020 Hb_000997_400 Hb_000997_400 Hb_000920_240--Hb_000997_400 Hb_029866_040 Hb_029866_040 Hb_000920_240--Hb_029866_040 Hb_000297_200 Hb_000297_200 Hb_000920_240--Hb_000297_200 Hb_000001_050 Hb_000001_050 Hb_000920_240--Hb_000001_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8039 1.47865 0 3.11773 1.27501 4.6403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0801 1.38883 3.81677 0.323727 0.516049

CAGE analysis