Hb_183420_010

Information

Type -
Description -
Location Contig183420: 108-523
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012461546.1
description PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067L4H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183420_010 0.0 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
2 Hb_000138_030 0.0041407 - - -
3 Hb_162002_010 0.0059656997 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
4 Hb_000417_010 0.0086671112 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
5 Hb_058844_010 0.009007815 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_081874_010 0.0165576774 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
7 Hb_008013_030 0.0222278031 - - -
8 Hb_001357_320 0.0247609084 - - GRP3S, putative [Ricinus communis]
9 Hb_124016_010 0.0254816485 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
10 Hb_018710_050 0.0255349301 - - -
11 Hb_002081_240 0.0263968186 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
12 Hb_001761_090 0.0282534579 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
13 Hb_002928_050 0.0299535561 - - -
14 Hb_005305_180 0.0306642549 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
15 Hb_058242_010 0.0316429142 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
16 Hb_006332_050 0.0316883682 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
17 Hb_147503_020 0.0321941354 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
18 Hb_184798_050 0.0362821719 - - -
19 Hb_007926_030 0.037020643 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
20 Hb_000977_230 0.0397858982 - - FT-like protein [Betula luminifera]

Gene co-expression network

sample Hb_183420_010 Hb_183420_010 Hb_000138_030 Hb_000138_030 Hb_183420_010--Hb_000138_030 Hb_162002_010 Hb_162002_010 Hb_183420_010--Hb_162002_010 Hb_000417_010 Hb_000417_010 Hb_183420_010--Hb_000417_010 Hb_058844_010 Hb_058844_010 Hb_183420_010--Hb_058844_010 Hb_081874_010 Hb_081874_010 Hb_183420_010--Hb_081874_010 Hb_008013_030 Hb_008013_030 Hb_183420_010--Hb_008013_030 Hb_000138_030--Hb_162002_010 Hb_000138_030--Hb_000417_010 Hb_000138_030--Hb_058844_010 Hb_000138_030--Hb_008013_030 Hb_000138_030--Hb_081874_010 Hb_162002_010--Hb_000417_010 Hb_162002_010--Hb_058844_010 Hb_162002_010--Hb_008013_030 Hb_018710_050 Hb_018710_050 Hb_162002_010--Hb_018710_050 Hb_000417_010--Hb_058844_010 Hb_000417_010--Hb_081874_010 Hb_001357_320 Hb_001357_320 Hb_000417_010--Hb_001357_320 Hb_058844_010--Hb_081874_010 Hb_058844_010--Hb_001357_320 Hb_081874_010--Hb_001357_320 Hb_124016_010 Hb_124016_010 Hb_081874_010--Hb_124016_010 Hb_001761_090 Hb_001761_090 Hb_081874_010--Hb_001761_090 Hb_005305_180 Hb_005305_180 Hb_081874_010--Hb_005305_180 Hb_008013_030--Hb_018710_050 Hb_002081_240 Hb_002081_240 Hb_008013_030--Hb_002081_240 Hb_002928_050 Hb_002928_050 Hb_008013_030--Hb_002928_050 Hb_163122_010 Hb_163122_010 Hb_008013_030--Hb_163122_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0968035 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.346376

CAGE analysis