Hb_163122_010

Information

Type -
Description -
Location Contig163122: 454-1161
Sequence    

Annotation

kegg
ID rcu:RCOM_1514570
description protein binding protein, putative
nr
ID XP_002511547.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID B9R972
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1514570 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase cip8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163122_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002928_050 0.013298527 - - -
3 Hb_002081_240 0.0168565279 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_018710_050 0.0177186257 - - -
5 Hb_008013_030 0.0210262005 - - -
6 Hb_126077_010 0.025949624 - - -
7 Hb_001024_010 0.0271053298 - - phosphofructokinase [Hevea brasiliensis]
8 Hb_000028_290 0.0271836769 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
9 Hb_052135_050 0.0304495161 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
10 Hb_009026_010 0.0311242935 - - Squalene monooxygenase, putative [Ricinus communis]
11 Hb_081843_010 0.0346000332 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
12 Hb_054127_030 0.0357098097 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
13 Hb_162002_010 0.0372820585 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
14 Hb_000138_030 0.0391054529 - - -
15 Hb_000192_100 0.041776608 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_019449_010 0.0422118408 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_183420_010 0.0432418108 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
18 Hb_000417_010 0.0518966196 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
19 Hb_058844_010 0.0522367492 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_029552_010 0.0533932581 - - hypothetical protein JCGZ_08684 [Jatropha curcas]

Gene co-expression network

sample Hb_163122_010 Hb_163122_010 Hb_002928_050 Hb_002928_050 Hb_163122_010--Hb_002928_050 Hb_002081_240 Hb_002081_240 Hb_163122_010--Hb_002081_240 Hb_018710_050 Hb_018710_050 Hb_163122_010--Hb_018710_050 Hb_008013_030 Hb_008013_030 Hb_163122_010--Hb_008013_030 Hb_126077_010 Hb_126077_010 Hb_163122_010--Hb_126077_010 Hb_001024_010 Hb_001024_010 Hb_163122_010--Hb_001024_010 Hb_002928_050--Hb_002081_240 Hb_002928_050--Hb_018710_050 Hb_002928_050--Hb_008013_030 Hb_162002_010 Hb_162002_010 Hb_002928_050--Hb_162002_010 Hb_000138_030 Hb_000138_030 Hb_002928_050--Hb_000138_030 Hb_002081_240--Hb_018710_050 Hb_002081_240--Hb_008013_030 Hb_002081_240--Hb_162002_010 Hb_002081_240--Hb_000138_030 Hb_018710_050--Hb_008013_030 Hb_018710_050--Hb_162002_010 Hb_018710_050--Hb_000138_030 Hb_008013_030--Hb_162002_010 Hb_008013_030--Hb_000138_030 Hb_126077_010--Hb_001024_010 Hb_000028_290 Hb_000028_290 Hb_126077_010--Hb_000028_290 Hb_052135_050 Hb_052135_050 Hb_126077_010--Hb_052135_050 Hb_009026_010 Hb_009026_010 Hb_126077_010--Hb_009026_010 Hb_081843_010 Hb_081843_010 Hb_126077_010--Hb_081843_010 Hb_054127_030 Hb_054127_030 Hb_126077_010--Hb_054127_030 Hb_001024_010--Hb_000028_290 Hb_001024_010--Hb_052135_050 Hb_001024_010--Hb_009026_010 Hb_001024_010--Hb_081843_010 Hb_001024_010--Hb_054127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.131997 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.371991

CAGE analysis