Hb_002928_050

Information

Type -
Description -
Location Contig2928: 25272-25541
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30684: 25982-34014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_050 0.0 - - -
2 Hb_002081_240 0.0035584586 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_018710_050 0.0044206971 - - -
4 Hb_008013_030 0.007728921 - - -
5 Hb_163122_010 0.013298527 - - protein binding protein, putative [Ricinus communis]
6 Hb_162002_010 0.0239905626 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
7 Hb_000138_030 0.0258148831 - - -
8 Hb_183420_010 0.0299535561 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
9 Hb_000417_010 0.0386141919 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
10 Hb_058844_010 0.0389545782 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
11 Hb_126077_010 0.039240834 - - -
12 Hb_001024_010 0.0403960013 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_000028_290 0.0404743113 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
14 Hb_052135_050 0.0437385317 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
15 Hb_009026_010 0.0444129575 - - Squalene monooxygenase, putative [Ricinus communis]
16 Hb_081874_010 0.0464961501 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
17 Hb_081843_010 0.0478867935 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
18 Hb_054127_030 0.0489959299 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
19 Hb_001357_320 0.0546875842 - - GRP3S, putative [Ricinus communis]
20 Hb_000192_100 0.0550589567 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_002928_050 Hb_002928_050 Hb_002081_240 Hb_002081_240 Hb_002928_050--Hb_002081_240 Hb_018710_050 Hb_018710_050 Hb_002928_050--Hb_018710_050 Hb_008013_030 Hb_008013_030 Hb_002928_050--Hb_008013_030 Hb_163122_010 Hb_163122_010 Hb_002928_050--Hb_163122_010 Hb_162002_010 Hb_162002_010 Hb_002928_050--Hb_162002_010 Hb_000138_030 Hb_000138_030 Hb_002928_050--Hb_000138_030 Hb_002081_240--Hb_018710_050 Hb_002081_240--Hb_008013_030 Hb_002081_240--Hb_163122_010 Hb_002081_240--Hb_162002_010 Hb_002081_240--Hb_000138_030 Hb_018710_050--Hb_008013_030 Hb_018710_050--Hb_163122_010 Hb_018710_050--Hb_162002_010 Hb_018710_050--Hb_000138_030 Hb_008013_030--Hb_162002_010 Hb_008013_030--Hb_000138_030 Hb_008013_030--Hb_163122_010 Hb_126077_010 Hb_126077_010 Hb_163122_010--Hb_126077_010 Hb_001024_010 Hb_001024_010 Hb_163122_010--Hb_001024_010 Hb_162002_010--Hb_000138_030 Hb_183420_010 Hb_183420_010 Hb_162002_010--Hb_183420_010 Hb_000417_010 Hb_000417_010 Hb_162002_010--Hb_000417_010 Hb_058844_010 Hb_058844_010 Hb_162002_010--Hb_058844_010 Hb_000138_030--Hb_183420_010 Hb_000138_030--Hb_000417_010 Hb_000138_030--Hb_058844_010 Hb_081874_010 Hb_081874_010 Hb_000138_030--Hb_081874_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.18708 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.5665

CAGE analysis