Hb_000417_010

Information

Type -
Description -
Location Contig417: 5700-6330
Sequence    

Annotation

kegg
ID tcc:TCM_029686
description Xylem bark cysteine peptidase 3 isoform 1
nr
ID XP_012091780.1
description PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
swissprot
ID P22895
description P34 probable thiol protease OS=Glycine max PE=1 SV=1
trembl
ID A0A067JBB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21572 PE=3 SV=1
Gene Ontology
ID GO:0008234
description low-temperature-induced cysteine proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41210: 5615-7326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_010 0.0 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
2 Hb_058844_010 0.0003407221 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_081874_010 0.0078913553 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
4 Hb_183420_010 0.0086671112 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
5 Hb_000138_030 0.0128075017 - - -
6 Hb_162002_010 0.014632303 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
7 Hb_001357_320 0.0160962375 - - GRP3S, putative [Ricinus communis]
8 Hb_124016_010 0.0168171643 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
9 Hb_001761_090 0.0195897556 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
10 Hb_005305_180 0.022001316 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
11 Hb_058242_010 0.0229803074 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
12 Hb_006332_050 0.0230257772 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
13 Hb_147503_020 0.0235317214 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
14 Hb_184798_050 0.0276213177 - - -
15 Hb_007926_030 0.0283600951 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
16 Hb_008013_030 0.0308910224 - - -
17 Hb_000977_230 0.0311265651 - - FT-like protein [Betula luminifera]
18 Hb_018710_050 0.034197118 - - -
19 Hb_001060_130 0.0344898662 - - -
20 Hb_002081_240 0.0350587193 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_010 Hb_000417_010 Hb_058844_010 Hb_058844_010 Hb_000417_010--Hb_058844_010 Hb_081874_010 Hb_081874_010 Hb_000417_010--Hb_081874_010 Hb_183420_010 Hb_183420_010 Hb_000417_010--Hb_183420_010 Hb_000138_030 Hb_000138_030 Hb_000417_010--Hb_000138_030 Hb_162002_010 Hb_162002_010 Hb_000417_010--Hb_162002_010 Hb_001357_320 Hb_001357_320 Hb_000417_010--Hb_001357_320 Hb_058844_010--Hb_081874_010 Hb_058844_010--Hb_183420_010 Hb_058844_010--Hb_000138_030 Hb_058844_010--Hb_162002_010 Hb_058844_010--Hb_001357_320 Hb_081874_010--Hb_001357_320 Hb_124016_010 Hb_124016_010 Hb_081874_010--Hb_124016_010 Hb_001761_090 Hb_001761_090 Hb_081874_010--Hb_001761_090 Hb_005305_180 Hb_005305_180 Hb_081874_010--Hb_005305_180 Hb_183420_010--Hb_000138_030 Hb_183420_010--Hb_162002_010 Hb_183420_010--Hb_081874_010 Hb_008013_030 Hb_008013_030 Hb_183420_010--Hb_008013_030 Hb_000138_030--Hb_162002_010 Hb_000138_030--Hb_008013_030 Hb_000138_030--Hb_081874_010 Hb_162002_010--Hb_008013_030 Hb_018710_050 Hb_018710_050 Hb_162002_010--Hb_018710_050 Hb_001357_320--Hb_124016_010 Hb_001357_320--Hb_001761_090 Hb_001357_320--Hb_005305_180 Hb_058242_010 Hb_058242_010 Hb_001357_320--Hb_058242_010 Hb_006332_050 Hb_006332_050 Hb_001357_320--Hb_006332_050 Hb_147503_020 Hb_147503_020 Hb_001357_320--Hb_147503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.16026 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.60268

CAGE analysis