Hb_008013_030

Information

Type -
Description -
Location Contig8013: 39129-45124
Sequence    

Annotation

kegg
ID vvi:104879858
description uncharacterized LOC104879858
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008013_030 0.0 - - -
2 Hb_018710_050 0.0033082909 - - -
3 Hb_002081_240 0.0041705303 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_002928_050 0.007728921 - - -
5 Hb_162002_010 0.0162634814 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_000138_030 0.0180881699 - - -
7 Hb_163122_010 0.0210262005 - - protein binding protein, putative [Ricinus communis]
8 Hb_183420_010 0.0222278031 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
9 Hb_000417_010 0.0308910224 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
10 Hb_058844_010 0.0312315264 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
11 Hb_081874_010 0.0387760288 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
12 Hb_126077_010 0.0469618325 - - -
13 Hb_001357_320 0.0469713617 - - GRP3S, putative [Ricinus communis]
14 Hb_124016_010 0.0476913019 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
15 Hb_001024_010 0.0481165796 - - phosphofructokinase [Hevea brasiliensis]
16 Hb_000028_290 0.0481948607 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
17 Hb_001761_090 0.0504598727 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
18 Hb_052135_050 0.0514578376 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
19 Hb_009026_010 0.0521319965 - - Squalene monooxygenase, putative [Ricinus communis]
20 Hb_005305_180 0.0528676415 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]

Gene co-expression network

sample Hb_008013_030 Hb_008013_030 Hb_018710_050 Hb_018710_050 Hb_008013_030--Hb_018710_050 Hb_002081_240 Hb_002081_240 Hb_008013_030--Hb_002081_240 Hb_002928_050 Hb_002928_050 Hb_008013_030--Hb_002928_050 Hb_162002_010 Hb_162002_010 Hb_008013_030--Hb_162002_010 Hb_000138_030 Hb_000138_030 Hb_008013_030--Hb_000138_030 Hb_163122_010 Hb_163122_010 Hb_008013_030--Hb_163122_010 Hb_018710_050--Hb_002081_240 Hb_018710_050--Hb_002928_050 Hb_018710_050--Hb_163122_010 Hb_018710_050--Hb_162002_010 Hb_018710_050--Hb_000138_030 Hb_002081_240--Hb_002928_050 Hb_002081_240--Hb_163122_010 Hb_002081_240--Hb_162002_010 Hb_002081_240--Hb_000138_030 Hb_002928_050--Hb_163122_010 Hb_002928_050--Hb_162002_010 Hb_002928_050--Hb_000138_030 Hb_162002_010--Hb_000138_030 Hb_183420_010 Hb_183420_010 Hb_162002_010--Hb_183420_010 Hb_000417_010 Hb_000417_010 Hb_162002_010--Hb_000417_010 Hb_058844_010 Hb_058844_010 Hb_162002_010--Hb_058844_010 Hb_000138_030--Hb_183420_010 Hb_000138_030--Hb_000417_010 Hb_000138_030--Hb_058844_010 Hb_081874_010 Hb_081874_010 Hb_000138_030--Hb_081874_010 Hb_126077_010 Hb_126077_010 Hb_163122_010--Hb_126077_010 Hb_001024_010 Hb_001024_010 Hb_163122_010--Hb_001024_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0383187 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.121054

CAGE analysis