Hb_162002_010

Information

Type -
Description -
Location Contig162002: 2911-3231
Sequence    

Annotation

kegg
ID rcu:RCOM_1256000
description hypothetical protein
nr
ID XP_012078598.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067K8E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14714 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162002_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_000138_030 0.0018250294 - - -
3 Hb_183420_010 0.0059656997 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
4 Hb_000417_010 0.014632303 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
5 Hb_058844_010 0.0149729742 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_008013_030 0.0162634814 - - -
7 Hb_018710_050 0.0195711255 - - -
8 Hb_002081_240 0.0204331616 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
9 Hb_081874_010 0.0225218641 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
10 Hb_002928_050 0.0239905626 - - -
11 Hb_001357_320 0.0307234795 - - GRP3S, putative [Ricinus communis]
12 Hb_124016_010 0.0314440491 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
13 Hb_001761_090 0.034215159 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
14 Hb_005305_180 0.0366252905 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
15 Hb_163122_010 0.0372820585 - - protein binding protein, putative [Ricinus communis]
16 Hb_058242_010 0.0376036643 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
17 Hb_006332_050 0.0376491049 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
18 Hb_147503_020 0.0381547208 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
19 Hb_184798_050 0.042241447 - - -
20 Hb_007926_030 0.0429796644 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]

Gene co-expression network

sample Hb_162002_010 Hb_162002_010 Hb_000138_030 Hb_000138_030 Hb_162002_010--Hb_000138_030 Hb_183420_010 Hb_183420_010 Hb_162002_010--Hb_183420_010 Hb_000417_010 Hb_000417_010 Hb_162002_010--Hb_000417_010 Hb_058844_010 Hb_058844_010 Hb_162002_010--Hb_058844_010 Hb_008013_030 Hb_008013_030 Hb_162002_010--Hb_008013_030 Hb_018710_050 Hb_018710_050 Hb_162002_010--Hb_018710_050 Hb_000138_030--Hb_183420_010 Hb_000138_030--Hb_000417_010 Hb_000138_030--Hb_058844_010 Hb_000138_030--Hb_008013_030 Hb_081874_010 Hb_081874_010 Hb_000138_030--Hb_081874_010 Hb_183420_010--Hb_000417_010 Hb_183420_010--Hb_058844_010 Hb_183420_010--Hb_081874_010 Hb_183420_010--Hb_008013_030 Hb_000417_010--Hb_058844_010 Hb_000417_010--Hb_081874_010 Hb_001357_320 Hb_001357_320 Hb_000417_010--Hb_001357_320 Hb_058844_010--Hb_081874_010 Hb_058844_010--Hb_001357_320 Hb_008013_030--Hb_018710_050 Hb_002081_240 Hb_002081_240 Hb_008013_030--Hb_002081_240 Hb_002928_050 Hb_002928_050 Hb_008013_030--Hb_002928_050 Hb_163122_010 Hb_163122_010 Hb_008013_030--Hb_163122_010 Hb_018710_050--Hb_002081_240 Hb_018710_050--Hb_002928_050 Hb_018710_050--Hb_163122_010 Hb_018710_050--Hb_000138_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.694185 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.40124

CAGE analysis