Hb_081874_010

Information

Type -
Description -
Location Contig81874: 1401-1817
Sequence    

Annotation

kegg
ID sot:102581051
description uncharacterized LOC102581051
nr
ID XP_006364939.1
description PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID A0A061FNI4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_043384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081874_010 0.0 - - PREDICTED: uncharacterized protein LOC102581051 [Solanum tuberosum]
2 Hb_058844_010 0.0075506475 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_000417_010 0.0078913553 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
4 Hb_001357_320 0.0082056397 - - GRP3S, putative [Ricinus communis]
5 Hb_124016_010 0.008926671 - - hypothetical protein POPTR_0008s21806g [Populus trichocarpa]
6 Hb_001761_090 0.0116997225 - - Protein STRUBBELIG-RECEPTOR FAMILY 5 [Glycine soja]
7 Hb_005305_180 0.0141117593 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010-like [Gossypium raimondii]
8 Hb_058242_010 0.0150909645 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
9 Hb_006332_050 0.0151364445 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]
10 Hb_147503_020 0.0156425042 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_183420_010 0.0165576774 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
12 Hb_184798_050 0.0197331507 - - -
13 Hb_007926_030 0.0204721403 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
14 Hb_000138_030 0.0206974094 - - -
15 Hb_162002_010 0.0225218641 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_000977_230 0.023239467 - - FT-like protein [Betula luminifera]
17 Hb_001060_130 0.0266039427 - - -
18 Hb_003608_020 0.0321409425 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
19 Hb_034691_020 0.0327365485 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_003007_020 0.0333093598 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_081874_010 Hb_081874_010 Hb_058844_010 Hb_058844_010 Hb_081874_010--Hb_058844_010 Hb_000417_010 Hb_000417_010 Hb_081874_010--Hb_000417_010 Hb_001357_320 Hb_001357_320 Hb_081874_010--Hb_001357_320 Hb_124016_010 Hb_124016_010 Hb_081874_010--Hb_124016_010 Hb_001761_090 Hb_001761_090 Hb_081874_010--Hb_001761_090 Hb_005305_180 Hb_005305_180 Hb_081874_010--Hb_005305_180 Hb_058844_010--Hb_000417_010 Hb_183420_010 Hb_183420_010 Hb_058844_010--Hb_183420_010 Hb_000138_030 Hb_000138_030 Hb_058844_010--Hb_000138_030 Hb_162002_010 Hb_162002_010 Hb_058844_010--Hb_162002_010 Hb_058844_010--Hb_001357_320 Hb_000417_010--Hb_183420_010 Hb_000417_010--Hb_000138_030 Hb_000417_010--Hb_162002_010 Hb_000417_010--Hb_001357_320 Hb_001357_320--Hb_124016_010 Hb_001357_320--Hb_001761_090 Hb_001357_320--Hb_005305_180 Hb_058242_010 Hb_058242_010 Hb_001357_320--Hb_058242_010 Hb_006332_050 Hb_006332_050 Hb_001357_320--Hb_006332_050 Hb_147503_020 Hb_147503_020 Hb_001357_320--Hb_147503_020 Hb_124016_010--Hb_001761_090 Hb_124016_010--Hb_005305_180 Hb_124016_010--Hb_058242_010 Hb_124016_010--Hb_006332_050 Hb_124016_010--Hb_147503_020 Hb_001761_090--Hb_005305_180 Hb_001761_090--Hb_058242_010 Hb_001761_090--Hb_006332_050 Hb_001761_090--Hb_147503_020 Hb_005305_180--Hb_058242_010 Hb_005305_180--Hb_006332_050 Hb_005305_180--Hb_147503_020 Hb_184798_050 Hb_184798_050 Hb_005305_180--Hb_184798_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0654674 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.25777

CAGE analysis