Hb_004453_200

Information

Type -
Description -
Location Contig4453: 127816-131126
Sequence    

Annotation

kegg
ID rcu:RCOM_1053890
description Boron transporter, putative
nr
ID XP_002514365.1
description Boron transporter, putative [Ricinus communis]
swissprot
ID Q9XI23
description Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
trembl
ID B9RK11
description Boron transporter, putative OS=Ricinus communis GN=RCOM_1053890 PE=4 SV=1
Gene Ontology
ID GO:0016021
description boron transporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_200 0.0 - - Boron transporter, putative [Ricinus communis]
2 Hb_000917_140 0.2230403395 - - -
3 Hb_000982_040 0.226932337 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004117_300 0.2284466693 - - -
5 Hb_001124_150 0.2315739713 - - -
6 Hb_181476_010 0.2357553152 - - -
7 Hb_038005_010 0.2717960647 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
8 Hb_000002_450 0.2723072617 - - hypothetical protein JCGZ_02285 [Jatropha curcas]
9 Hb_002184_040 0.272504694 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
10 Hb_001142_040 0.2725782591 - - PREDICTED: protein YLS9 [Jatropha curcas]
11 Hb_001652_060 0.2726135208 - - PREDICTED: uncharacterized protein LOC103404034 [Malus domestica]
12 Hb_003857_010 0.272990151 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007926_020 0.2737455713 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
14 Hb_078903_010 0.2743525814 - - Osmotin precursor, putative [Ricinus communis]
15 Hb_123560_010 0.2770399118 - - hypothetical protein JCGZ_12463 [Jatropha curcas]
16 Hb_005563_020 0.2817328662 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
17 Hb_001617_030 0.2834912594 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005144_020 0.2866654786 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
19 Hb_002120_020 0.2868258454 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
20 Hb_015146_010 0.2899686504 - - -

Gene co-expression network

sample Hb_004453_200 Hb_004453_200 Hb_000917_140 Hb_000917_140 Hb_004453_200--Hb_000917_140 Hb_000982_040 Hb_000982_040 Hb_004453_200--Hb_000982_040 Hb_004117_300 Hb_004117_300 Hb_004453_200--Hb_004117_300 Hb_001124_150 Hb_001124_150 Hb_004453_200--Hb_001124_150 Hb_181476_010 Hb_181476_010 Hb_004453_200--Hb_181476_010 Hb_038005_010 Hb_038005_010 Hb_004453_200--Hb_038005_010 Hb_000917_140--Hb_004117_300 Hb_000917_140--Hb_181476_010 Hb_000917_140--Hb_038005_010 Hb_002120_020 Hb_002120_020 Hb_000917_140--Hb_002120_020 Hb_184484_010 Hb_184484_010 Hb_000917_140--Hb_184484_010 Hb_027846_010 Hb_027846_010 Hb_000917_140--Hb_027846_010 Hb_000982_040--Hb_000917_140 Hb_000982_040--Hb_004117_300 Hb_000982_040--Hb_181476_010 Hb_000982_040--Hb_038005_010 Hb_000982_040--Hb_002120_020 Hb_000982_040--Hb_184484_010 Hb_004117_300--Hb_181476_010 Hb_004117_300--Hb_038005_010 Hb_004117_300--Hb_002120_020 Hb_004117_300--Hb_184484_010 Hb_004117_300--Hb_027846_010 Hb_123560_010 Hb_123560_010 Hb_001124_150--Hb_123560_010 Hb_005563_020 Hb_005563_020 Hb_001124_150--Hb_005563_020 Hb_078903_010 Hb_078903_010 Hb_001124_150--Hb_078903_010 Hb_001652_060 Hb_001652_060 Hb_001124_150--Hb_001652_060 Hb_012136_010 Hb_012136_010 Hb_001124_150--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_001124_150--Hb_005066_060 Hb_181476_010--Hb_038005_010 Hb_181476_010--Hb_002120_020 Hb_181476_010--Hb_184484_010 Hb_181476_010--Hb_027846_010 Hb_038005_010--Hb_002120_020 Hb_038005_010--Hb_184484_010 Hb_038005_010--Hb_027846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00774901 0 0.0185517 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.105734 0

CAGE analysis