Hb_002368_040

Information

Type -
Description -
Location Contig2368: 88454-92026
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019172mg
description hypothetical protein
nr
ID XP_007226738.1
description hypothetical protein PRUPE_ppa019172mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XPC5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019172mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24767: 88962-89177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_040 0.0 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
2 Hb_004117_180 0.1271651736 - - -
3 Hb_011174_010 0.1287546989 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
4 Hb_000189_530 0.1373023819 - - 40S ribosomal protein S24B [Hevea brasiliensis]
5 Hb_011016_090 0.1430472686 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
6 Hb_000032_540 0.1489494983 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
7 Hb_003919_010 0.1505736209 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_008725_200 0.1526252446 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
9 Hb_011161_040 0.1533006756 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
10 Hb_000193_350 0.153395171 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
11 Hb_017711_010 0.1639631264 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
12 Hb_000366_100 0.1657380287 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
13 Hb_008016_010 0.167825909 - - PREDICTED: protein LURP-one-related 15-like isoform X1 [Jatropha curcas]
14 Hb_000200_210 0.1709498223 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004968_060 0.1710085278 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000617_320 0.1712482349 - - 40S ribosomal protein S21B [Hevea brasiliensis]
17 Hb_000101_090 0.1715506942 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
18 Hb_000622_100 0.1721869173 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
19 Hb_003633_130 0.1724173557 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
20 Hb_007166_050 0.1727294756 - - -

Gene co-expression network

sample Hb_002368_040 Hb_002368_040 Hb_004117_180 Hb_004117_180 Hb_002368_040--Hb_004117_180 Hb_011174_010 Hb_011174_010 Hb_002368_040--Hb_011174_010 Hb_000189_530 Hb_000189_530 Hb_002368_040--Hb_000189_530 Hb_011016_090 Hb_011016_090 Hb_002368_040--Hb_011016_090 Hb_000032_540 Hb_000032_540 Hb_002368_040--Hb_000032_540 Hb_003919_010 Hb_003919_010 Hb_002368_040--Hb_003919_010 Hb_000193_350 Hb_000193_350 Hb_004117_180--Hb_000193_350 Hb_004117_180--Hb_011016_090 Hb_004117_180--Hb_011174_010 Hb_000101_090 Hb_000101_090 Hb_004117_180--Hb_000101_090 Hb_102156_010 Hb_102156_010 Hb_004117_180--Hb_102156_010 Hb_002272_260 Hb_002272_260 Hb_004117_180--Hb_002272_260 Hb_011174_010--Hb_002272_260 Hb_000622_100 Hb_000622_100 Hb_011174_010--Hb_000622_100 Hb_011174_010--Hb_011016_090 Hb_073367_010 Hb_073367_010 Hb_011174_010--Hb_073367_010 Hb_000771_100 Hb_000771_100 Hb_011174_010--Hb_000771_100 Hb_001019_090 Hb_001019_090 Hb_000189_530--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_000189_530--Hb_000617_320 Hb_000366_100 Hb_000366_100 Hb_000189_530--Hb_000366_100 Hb_000152_430 Hb_000152_430 Hb_000189_530--Hb_000152_430 Hb_007166_050 Hb_007166_050 Hb_000189_530--Hb_007166_050 Hb_000189_530--Hb_000193_350 Hb_011016_090--Hb_000189_530 Hb_000175_400 Hb_000175_400 Hb_011016_090--Hb_000175_400 Hb_011016_090--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_011016_090--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_011016_090--Hb_004453_150 Hb_011016_090--Hb_000032_540 Hb_000032_540--Hb_002259_030 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000032_540--Hb_000175_400 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090 Hb_000948_190 Hb_000948_190 Hb_003919_010--Hb_000948_190 Hb_000684_230 Hb_000684_230 Hb_003919_010--Hb_000684_230 Hb_003919_010--Hb_000771_100 Hb_023226_010 Hb_023226_010 Hb_003919_010--Hb_023226_010 Hb_000080_060 Hb_000080_060 Hb_003919_010--Hb_000080_060 Hb_003919_010--Hb_000144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60096 0.0519419 0.352463 0.596593 0.883849 3.0857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6462 2.30982 0.795024 0.114433 0

CAGE analysis