Hb_001638_320

Information

Type -
Description -
Location Contig1638: 228098-228724
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10150g
description POPTRDRAFT_572467; hypothetical protein
nr
ID XP_002320901.2
description hypothetical protein POPTR_0014s10150g [Populus trichocarpa]
swissprot
ID Q8LDU5
description Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2
trembl
ID B9I949
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10150g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_320 0.0 - - hypothetical protein POPTR_0014s10150g [Populus trichocarpa]
2 Hb_007009_010 0.1046570409 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
3 Hb_001252_210 0.123672715 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
4 Hb_003414_050 0.1256683559 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
5 Hb_024758_010 0.1315671496 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
6 Hb_000701_100 0.1318075538 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
7 Hb_009615_070 0.1331376197 - - type X protein phosphatase-II [Populus trichocarpa]
8 Hb_001057_040 0.1336193775 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
9 Hb_001882_070 0.1355586572 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
10 Hb_001205_150 0.1363023999 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
11 Hb_000336_240 0.1371540544 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
12 Hb_003207_170 0.1375542494 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
13 Hb_002221_070 0.1401102186 - - beta-glucanase, putative [Ricinus communis]
14 Hb_000985_060 0.1422234721 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
15 Hb_000638_170 0.1439739892 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
16 Hb_000125_100 0.1448102781 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105635070 [Jatropha curcas]
17 Hb_026314_020 0.1458533415 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
18 Hb_000483_390 0.1465971058 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
19 Hb_001284_030 0.1471392114 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_005045_070 0.1475888377 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]

Gene co-expression network

sample Hb_001638_320 Hb_001638_320 Hb_007009_010 Hb_007009_010 Hb_001638_320--Hb_007009_010 Hb_001252_210 Hb_001252_210 Hb_001638_320--Hb_001252_210 Hb_003414_050 Hb_003414_050 Hb_001638_320--Hb_003414_050 Hb_024758_010 Hb_024758_010 Hb_001638_320--Hb_024758_010 Hb_000701_100 Hb_000701_100 Hb_001638_320--Hb_000701_100 Hb_009615_070 Hb_009615_070 Hb_001638_320--Hb_009615_070 Hb_007009_010--Hb_009615_070 Hb_000336_240 Hb_000336_240 Hb_007009_010--Hb_000336_240 Hb_003605_090 Hb_003605_090 Hb_007009_010--Hb_003605_090 Hb_003502_090 Hb_003502_090 Hb_007009_010--Hb_003502_090 Hb_007009_010--Hb_003414_050 Hb_010883_050 Hb_010883_050 Hb_007009_010--Hb_010883_050 Hb_002284_230 Hb_002284_230 Hb_001252_210--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_001252_210--Hb_000574_130 Hb_003894_080 Hb_003894_080 Hb_001252_210--Hb_003894_080 Hb_000046_350 Hb_000046_350 Hb_001252_210--Hb_000046_350 Hb_000733_080 Hb_000733_080 Hb_001252_210--Hb_000733_080 Hb_019762_020 Hb_019762_020 Hb_001252_210--Hb_019762_020 Hb_003671_020 Hb_003671_020 Hb_003414_050--Hb_003671_020 Hb_003414_050--Hb_009615_070 Hb_003414_050--Hb_000701_100 Hb_000125_100 Hb_000125_100 Hb_003414_050--Hb_000125_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_001284_030 Hb_001284_030 Hb_024758_010--Hb_001284_030 Hb_024758_010--Hb_000046_350 Hb_024758_010--Hb_001252_210 Hb_001353_010 Hb_001353_010 Hb_024758_010--Hb_001353_010 Hb_002878_010 Hb_002878_010 Hb_024758_010--Hb_002878_010 Hb_001301_050 Hb_001301_050 Hb_024758_010--Hb_001301_050 Hb_001057_040 Hb_001057_040 Hb_000701_100--Hb_001057_040 Hb_004899_370 Hb_004899_370 Hb_000701_100--Hb_004899_370 Hb_000805_240 Hb_000805_240 Hb_000701_100--Hb_000805_240 Hb_005269_080 Hb_005269_080 Hb_000701_100--Hb_005269_080 Hb_000005_090 Hb_000005_090 Hb_000701_100--Hb_000005_090 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_009615_070--Hb_003605_090 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41581 1.64851 0.789146 6.12573 0.662752 3.36304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25873 7.06649 4.58197 1.88655 2.60879

CAGE analysis