Hb_001329_280

Information

Type -
Description -
Location Contig1329: 204877-233712
Sequence    

Annotation

kegg
ID rcu:RCOM_1343590
description multidrug resistance protein 1, 2, putative (EC:3.6.3.27 3.6.3.44)
nr
ID AIU41629.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9FWX7
description ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1
trembl
ID A0A0E0DUF2
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0016021
description atp binding cassette subfamily b4 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09443: 204902-206588 , PASA_asmbl_09444: 206622-206986 , PASA_asmbl_09445: 207304-211544 , PASA_asmbl_09447: 229983-230141 , PASA_asmbl_09448: 231557-232074 , PASA_asmbl_09449: 232086-232472 , PASA_asmbl_09450: 232570-232767 , PASA_asmbl_09451: 232781-232920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_280 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_002811_120 0.1045024138 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
3 Hb_004881_050 0.1198061819 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
4 Hb_000335_010 0.1220876304 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_079326_010 0.1222262123 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
6 Hb_000134_360 0.1222558248 - - PREDICTED: protein gar2 [Jatropha curcas]
7 Hb_001609_010 0.1253150629 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
8 Hb_000457_060 0.1260604805 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
9 Hb_000300_580 0.1275318311 - - PREDICTED: importin-5-like [Jatropha curcas]
10 Hb_002493_090 0.1281767467 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
11 Hb_001863_110 0.1283170579 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_000631_150 0.1289073127 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
13 Hb_000136_150 0.1295897211 - - hypothetical protein VITISV_038366 [Vitis vinifera]
14 Hb_003363_010 0.1300074145 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005129_050 0.135385143 - - PREDICTED: probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Jatropha curcas]
16 Hb_006114_020 0.1368335922 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000317_440 0.1369079198 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
18 Hb_011644_020 0.1370174 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
19 Hb_001437_100 0.1385163616 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
20 Hb_001486_120 0.1391146305 - - PREDICTED: importin-5-like [Jatropha curcas]

Gene co-expression network

sample Hb_001329_280 Hb_001329_280 Hb_002811_120 Hb_002811_120 Hb_001329_280--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_001329_280--Hb_004881_050 Hb_000335_010 Hb_000335_010 Hb_001329_280--Hb_000335_010 Hb_079326_010 Hb_079326_010 Hb_001329_280--Hb_079326_010 Hb_000134_360 Hb_000134_360 Hb_001329_280--Hb_000134_360 Hb_001609_010 Hb_001609_010 Hb_001329_280--Hb_001609_010 Hb_002811_120--Hb_004881_050 Hb_003711_040 Hb_003711_040 Hb_002811_120--Hb_003711_040 Hb_003434_060 Hb_003434_060 Hb_002811_120--Hb_003434_060 Hb_002811_120--Hb_079326_010 Hb_001863_110 Hb_001863_110 Hb_002811_120--Hb_001863_110 Hb_000316_030 Hb_000316_030 Hb_002811_120--Hb_000316_030 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_004881_050--Hb_003434_060 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010 Hb_079326_010--Hb_000372_040 Hb_002475_050 Hb_002475_050 Hb_079326_010--Hb_002475_050 Hb_011644_020 Hb_011644_020 Hb_079326_010--Hb_011644_020 Hb_005368_010 Hb_005368_010 Hb_079326_010--Hb_005368_010 Hb_079326_010--Hb_000134_360 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_001486_120 Hb_001486_120 Hb_000134_360--Hb_001486_120 Hb_008528_010 Hb_008528_010 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_005000_270 Hb_005000_270 Hb_000134_360--Hb_005000_270 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100 Hb_001609_010--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001609_010--Hb_001040_160 Hb_001609_010--Hb_000316_030 Hb_001871_040 Hb_001871_040 Hb_001609_010--Hb_001871_040 Hb_001609_010--Hb_004881_050 Hb_001609_010--Hb_000457_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3859 3.46583 0.723402 6.33105 22.2239 28.9501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6835 4.9649 5.92808 7.26375 8.67354

CAGE analysis