Hb_000976_010

Information

Type transcription factor
Description TF Family: LOB
Location Contig976: 32355-35088
Sequence    

Annotation

kegg
ID rcu:RCOM_1575710
description LOB domain-containing protein, putative
nr
ID XP_012087393.1
description PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q9SHE9
description LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1
trembl
ID A0A067JQI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22638 PE=4 SV=1
Gene Ontology
ID GO:0009855
description lob domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64040: 32236-35412
cDNA
(Sanger)
(ID:Location)		 021_D14.ab1: 32566-35412

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000976_010 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]
2 Hb_000027_270 0.1093890313 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
3 Hb_002038_060 0.1294606521 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
4 Hb_001633_110 0.1427212507 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
5 Hb_003001_030 0.1485194496 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
6 Hb_000700_090 0.1527980479 - - protein with unknown function [Ricinus communis]
7 Hb_006602_010 0.1535900697 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
8 Hb_032531_030 0.1569134803 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_006602_020 0.1577104178 - - unknown [Medicago truncatula]
10 Hb_026048_100 0.1593818246 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
11 Hb_003638_030 0.1593911082 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
12 Hb_005488_070 0.1598051941 - - putative cytochrome P450 [Oryza sativa Japonica Group]
13 Hb_001902_050 0.1610021063 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
14 Hb_114684_020 0.162470231 - - beta-1,3-glucanase [Hevea brasiliensis]
15 Hb_009510_030 0.1649188647 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
16 Hb_005227_070 0.1653543159 - - serine/threonine protein kinase, putative [Ricinus communis]
17 Hb_004126_010 0.1659616521 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
18 Hb_019613_020 0.1662515571 - - phospholipase C, putative [Ricinus communis]
19 Hb_006076_030 0.1662976705 desease resistance Gene Name: NB-ARC NBS resistance protein [Hevea brasiliensis]
20 Hb_000057_060 0.1698879875 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000976_010 Hb_000976_010 Hb_000027_270 Hb_000027_270 Hb_000976_010--Hb_000027_270 Hb_002038_060 Hb_002038_060 Hb_000976_010--Hb_002038_060 Hb_001633_110 Hb_001633_110 Hb_000976_010--Hb_001633_110 Hb_003001_030 Hb_003001_030 Hb_000976_010--Hb_003001_030 Hb_000700_090 Hb_000700_090 Hb_000976_010--Hb_000700_090 Hb_006602_010 Hb_006602_010 Hb_000976_010--Hb_006602_010 Hb_000027_270--Hb_000700_090 Hb_003494_240 Hb_003494_240 Hb_000027_270--Hb_003494_240 Hb_005488_070 Hb_005488_070 Hb_000027_270--Hb_005488_070 Hb_000078_130 Hb_000078_130 Hb_000027_270--Hb_000078_130 Hb_001454_060 Hb_001454_060 Hb_000027_270--Hb_001454_060 Hb_127979_010 Hb_127979_010 Hb_000027_270--Hb_127979_010 Hb_103873_010 Hb_103873_010 Hb_002038_060--Hb_103873_010 Hb_002038_060--Hb_003001_030 Hb_004126_010 Hb_004126_010 Hb_002038_060--Hb_004126_010 Hb_014067_010 Hb_014067_010 Hb_002038_060--Hb_014067_010 Hb_009510_030 Hb_009510_030 Hb_002038_060--Hb_009510_030 Hb_001999_060 Hb_001999_060 Hb_002038_060--Hb_001999_060 Hb_011671_330 Hb_011671_330 Hb_001633_110--Hb_011671_330 Hb_000953_140 Hb_000953_140 Hb_001633_110--Hb_000953_140 Hb_002377_050 Hb_002377_050 Hb_001633_110--Hb_002377_050 Hb_000208_290 Hb_000208_290 Hb_001633_110--Hb_000208_290 Hb_001633_110--Hb_000027_270 Hb_001433_170 Hb_001433_170 Hb_001633_110--Hb_001433_170 Hb_003001_030--Hb_009510_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_005730_020 Hb_005730_020 Hb_003001_030--Hb_005730_020 Hb_002609_260 Hb_002609_260 Hb_003001_030--Hb_002609_260 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110 Hb_006602_020 Hb_006602_020 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_006602_010--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_006602_010--Hb_005539_290 Hb_006602_010--Hb_004735_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.7993 41.7379 0.41875 6.87621 210.153 281.721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
142.007 84.6299 198.118 50.7259 1.36756

CAGE analysis