Hb_000513_010

Information

Type -
Description -
Location Contig513: 3051-3488
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05190g
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID U5FXA1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s05190g PE=4 SV=1
Gene Ontology
ID GO:0000166
description cysteine-rich receptor-like protein kinase 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000513_010 0.0 - - -
2 Hb_032107_010 0.002979619 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
3 Hb_032252_040 0.003430159 - - -
4 Hb_000232_050 0.0059521496 - - -
5 Hb_011457_010 0.0073993204 - - nucleolar protein nop56, putative [Ricinus communis]
6 Hb_110798_010 0.0087686529 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_175651_010 0.0088467197 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_004800_040 0.0099230488 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
9 Hb_001147_100 0.0106618338 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_007287_020 0.010976435 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_009563_020 0.0112108415 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_000425_050 0.0113343533 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
13 Hb_136367_010 0.0144983411 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.0210470512 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0232276532 - - -
16 Hb_004208_110 0.0233452144 - - -
17 Hb_049901_010 0.1232107583 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.123831612 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.1248334827 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.127590534 - - -

Gene co-expression network

sample Hb_000513_010 Hb_000513_010 Hb_032107_010 Hb_032107_010 Hb_000513_010--Hb_032107_010 Hb_032252_040 Hb_032252_040 Hb_000513_010--Hb_032252_040 Hb_000232_050 Hb_000232_050 Hb_000513_010--Hb_000232_050 Hb_011457_010 Hb_011457_010 Hb_000513_010--Hb_011457_010 Hb_110798_010 Hb_110798_010 Hb_000513_010--Hb_110798_010 Hb_175651_010 Hb_175651_010 Hb_000513_010--Hb_175651_010 Hb_032107_010--Hb_032252_040 Hb_032107_010--Hb_011457_010 Hb_032107_010--Hb_110798_010 Hb_032107_010--Hb_175651_010 Hb_004800_040 Hb_004800_040 Hb_032107_010--Hb_004800_040 Hb_032252_040--Hb_011457_010 Hb_032252_040--Hb_110798_010 Hb_032252_040--Hb_175651_010 Hb_032252_040--Hb_004800_040 Hb_136367_010 Hb_136367_010 Hb_000232_050--Hb_136367_010 Hb_000232_050--Hb_032107_010 Hb_000232_050--Hb_032252_040 Hb_000232_050--Hb_011457_010 Hb_000232_050--Hb_110798_010 Hb_011457_010--Hb_110798_010 Hb_011457_010--Hb_175651_010 Hb_011457_010--Hb_004800_040 Hb_001147_100 Hb_001147_100 Hb_011457_010--Hb_001147_100 Hb_007287_020 Hb_007287_020 Hb_011457_010--Hb_007287_020 Hb_009563_020 Hb_009563_020 Hb_011457_010--Hb_009563_020 Hb_110798_010--Hb_175651_010 Hb_110798_010--Hb_004800_040 Hb_110798_010--Hb_001147_100 Hb_110798_010--Hb_007287_020 Hb_110798_010--Hb_009563_020 Hb_175651_010--Hb_004800_040 Hb_175651_010--Hb_001147_100 Hb_175651_010--Hb_007287_020 Hb_175651_010--Hb_009563_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168407 0 0 0.055832 0

CAGE analysis