Hb_032107_010

Information

Type -
Description -
Location Contig32107: 34-552
Sequence    

Annotation

kegg
ID tcc:TCM_009053
description DNA/RNA polymerases superfamily protein
nr
ID XP_009775240.1
description PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061E4Q3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009053 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032107_010 0.0 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
2 Hb_032252_040 0.0004505426 - - -
3 Hb_000513_010 0.002979619 - - -
4 Hb_011457_010 0.0044197588 - - nucleolar protein nop56, putative [Ricinus communis]
5 Hb_110798_010 0.0057891231 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_175651_010 0.005867192 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_004800_040 0.0069435512 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
8 Hb_001147_100 0.0076823592 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_007287_020 0.0079969709 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_009563_020 0.0082313854 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000425_050 0.0083549014 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
12 Hb_000232_050 0.0089316772 - - -
13 Hb_136367_010 0.0174775293 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.0240258186 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0262062502 - - -
16 Hb_004208_110 0.0263238019 - - -
17 Hb_049901_010 0.1202623237 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.1208835289 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.1277897032 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.1305458047 - - -

Gene co-expression network

sample Hb_032107_010 Hb_032107_010 Hb_032252_040 Hb_032252_040 Hb_032107_010--Hb_032252_040 Hb_000513_010 Hb_000513_010 Hb_032107_010--Hb_000513_010 Hb_011457_010 Hb_011457_010 Hb_032107_010--Hb_011457_010 Hb_110798_010 Hb_110798_010 Hb_032107_010--Hb_110798_010 Hb_175651_010 Hb_175651_010 Hb_032107_010--Hb_175651_010 Hb_004800_040 Hb_004800_040 Hb_032107_010--Hb_004800_040 Hb_032252_040--Hb_000513_010 Hb_032252_040--Hb_011457_010 Hb_032252_040--Hb_110798_010 Hb_032252_040--Hb_175651_010 Hb_032252_040--Hb_004800_040 Hb_000232_050 Hb_000232_050 Hb_000513_010--Hb_000232_050 Hb_000513_010--Hb_011457_010 Hb_000513_010--Hb_110798_010 Hb_000513_010--Hb_175651_010 Hb_011457_010--Hb_110798_010 Hb_011457_010--Hb_175651_010 Hb_011457_010--Hb_004800_040 Hb_001147_100 Hb_001147_100 Hb_011457_010--Hb_001147_100 Hb_007287_020 Hb_007287_020 Hb_011457_010--Hb_007287_020 Hb_009563_020 Hb_009563_020 Hb_011457_010--Hb_009563_020 Hb_110798_010--Hb_175651_010 Hb_110798_010--Hb_004800_040 Hb_110798_010--Hb_001147_100 Hb_110798_010--Hb_007287_020 Hb_110798_010--Hb_009563_020 Hb_175651_010--Hb_004800_040 Hb_175651_010--Hb_001147_100 Hb_175651_010--Hb_007287_020 Hb_175651_010--Hb_009563_020 Hb_004800_040--Hb_001147_100 Hb_004800_040--Hb_007287_020 Hb_004800_040--Hb_009563_020 Hb_000425_050 Hb_000425_050 Hb_004800_040--Hb_000425_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262392 0 0 0.0855879 0

CAGE analysis