Hb_000232_050

Information

Type -
Description -
Location Contig232: 110892-112832
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000232_050 0.0 - - -
2 Hb_000513_010 0.0059521496 - - -
3 Hb_136367_010 0.0085466069 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
4 Hb_032107_010 0.0089316772 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
5 Hb_032252_040 0.0093821979 - - -
6 Hb_011457_010 0.0133511282 - - nucleolar protein nop56, putative [Ricinus communis]
7 Hb_110798_010 0.014720355 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_175651_010 0.0147984154 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_086639_060 0.0150959571 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
10 Hb_004800_040 0.0158746513 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
11 Hb_001147_100 0.0166133676 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_007287_020 0.0169279383 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_009563_020 0.0171623217 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_007122_030 0.0172768326 - - -
15 Hb_000425_050 0.0172858211 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
16 Hb_004208_110 0.0173944095 - - -
17 Hb_019093_010 0.1189243624 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_000069_680 0.1216832339 - - -
19 Hb_049901_010 0.1290970405 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_034454_020 0.1297171764 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000232_050 Hb_000232_050 Hb_000513_010 Hb_000513_010 Hb_000232_050--Hb_000513_010 Hb_136367_010 Hb_136367_010 Hb_000232_050--Hb_136367_010 Hb_032107_010 Hb_032107_010 Hb_000232_050--Hb_032107_010 Hb_032252_040 Hb_032252_040 Hb_000232_050--Hb_032252_040 Hb_011457_010 Hb_011457_010 Hb_000232_050--Hb_011457_010 Hb_110798_010 Hb_110798_010 Hb_000232_050--Hb_110798_010 Hb_000513_010--Hb_032107_010 Hb_000513_010--Hb_032252_040 Hb_000513_010--Hb_011457_010 Hb_000513_010--Hb_110798_010 Hb_175651_010 Hb_175651_010 Hb_000513_010--Hb_175651_010 Hb_086639_060 Hb_086639_060 Hb_136367_010--Hb_086639_060 Hb_007122_030 Hb_007122_030 Hb_136367_010--Hb_007122_030 Hb_004208_110 Hb_004208_110 Hb_136367_010--Hb_004208_110 Hb_136367_010--Hb_000513_010 Hb_136367_010--Hb_032107_010 Hb_032107_010--Hb_032252_040 Hb_032107_010--Hb_011457_010 Hb_032107_010--Hb_110798_010 Hb_032107_010--Hb_175651_010 Hb_004800_040 Hb_004800_040 Hb_032107_010--Hb_004800_040 Hb_032252_040--Hb_011457_010 Hb_032252_040--Hb_110798_010 Hb_032252_040--Hb_175651_010 Hb_032252_040--Hb_004800_040 Hb_011457_010--Hb_110798_010 Hb_011457_010--Hb_175651_010 Hb_011457_010--Hb_004800_040 Hb_001147_100 Hb_001147_100 Hb_011457_010--Hb_001147_100 Hb_007287_020 Hb_007287_020 Hb_011457_010--Hb_007287_020 Hb_009563_020 Hb_009563_020 Hb_011457_010--Hb_009563_020 Hb_110798_010--Hb_175651_010 Hb_110798_010--Hb_004800_040 Hb_110798_010--Hb_001147_100 Hb_110798_010--Hb_007287_020 Hb_110798_010--Hb_009563_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231319 0 0 0.0792054 0

CAGE analysis